View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979_low_4 (Length: 286)
Name: NF4979_low_4
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 29536114 - 29536332
Alignment:
| Q |
19 |
gaccttgtaaagtaccggtgggatttcgtcccctttgaaaagctcctcgtcgcccataaaggtgcggattcctccttttctcagtactttgcagagatcg |
118 |
Q |
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| T |
29536114 |
gaccttgtaaagtaccggtgggatttcgtcccctttgaaaagctcctcatcgcacatgaaggtgctgattcgtcctttactcagtactttgcagagatcg |
29536213 |
T |
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| Q |
119 |
ccagcaaaacctttacaagtatcatgaccttgaaagctaaggaacacatcataggtggtcgaaaacgaggagaattgtagattagccatgaaacttgcag |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29536214 |
ccagcaaaacctttacaagtatcatgaccttgaaagctaaggaacacatcgtaggtggtcgaaaacgaggaggattgtagattagccatgaaacttgcag |
29536313 |
T |
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| Q |
219 |
tggatccttattcttcttc |
237 |
Q |
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||||||||||||||||||| |
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| T |
29536314 |
tggatccttattcttcttc |
29536332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29536339 - 29536384
Alignment:
| Q |
229 |
ttcttcttcattactcttatagttgggttaaaagttaaacaagtat |
274 |
Q |
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| T |
29536339 |
ttcttcttcattcctcttatagttgggttaaaagttaaacaagtat |
29536384 |
T |
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