View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4979_low_5 (Length: 278)
Name: NF4979_low_5
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 50765130 - 50765390
Alignment:
| Q |
1 |
tatgcatgtgggattcaacatactgaatatgctttataaattaagaaattatttatcctaaatttaaaggtcattgctctcgacattgactccaccatgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50765130 |
tatgcatgtgggattcaacatactgaatatgctttataaattaagaaattatttatcctaaatttaaaggtcattgctctcgacattgactccaccatgg |
50765229 |
T |
|
| Q |
101 |
cactaaattataacaaaaaatggaggcaagtttggtcctggaggctcgccggggcagagaaacccccaatgcagtcatcacattggtagcaggattcaaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50765230 |
tactaaattatgacaaaaaatggaggcaagtttggtcctggaggctcgccggggcagagaaacccccaatgcagtcatcacattggtagcaggattcaaa |
50765329 |
T |
|
| Q |
201 |
cttaggtctagtgggacttgagttgaatctttaccgactagaccaacttacatcacctttg |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50765330 |
cttaggtctagtgggacttgagttgaatctttaccgactagaccaacttacatcacctttg |
50765390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University