View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4979_low_6 (Length: 234)
Name: NF4979_low_6
Description: NF4979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4979_low_6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 12631306 - 12631073
Alignment:
| Q |
1 |
aaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactaggacatgaatgatct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
12631306 |
aaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaactttcatgaactacaaaaatactaggacatgaatgatct |
12631207 |
T |
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| Q |
101 |
tcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631206 |
tcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatg |
12631107 |
T |
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| Q |
201 |
taagagtctatcttaagtcaacaatgaaggctcc |
234 |
Q |
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| T |
12631106 |
taagagtctatcttaattcaacaatgaaggctcc |
12631073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 45289116 - 45288883
Alignment:
| Q |
1 |
aaaaagatgaaaagttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactaggacatgaatgatct |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||| |
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| T |
45289116 |
aaaaagatgaaaagttcaagaaatgcatcgatagacacttatgagtaaaggcaaatagaaactttcatgaactacaaaaatattaggacatgaatgatct |
45289017 |
T |
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| Q |
101 |
tcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatg |
200 |
Q |
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| T |
45289016 |
tcattgtctttcatccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatg |
45288917 |
T |
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| Q |
201 |
taagagtctatcttaagtcaacaatgaaggctcc |
234 |
Q |
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| T |
45288916 |
taagagtctatcttaattcaacaatgaaggctcc |
45288883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 234
Target Start/End: Original strand, 31607683 - 31607903
Alignment:
| Q |
14 |
gttcaagaaatgcatggatagacacttatgagtaaaggcaaatagaaaatttcatgaactacaaatatactaggacatgaatgatcttcattgtctttca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31607683 |
gttcaagaaatgcatggatagacacttatgagtaaatgcaaatagaaactttcatgaactacaaaaatactaggacatgaatgatcttcattgtctttca |
31607782 |
T |
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| Q |
114 |
tccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatgtaagagtctatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607783 |
tccaagggcggttgtaaggctagaaagtagcttacgaaatatgttatctgccaaaaccgttcctaagaagcttgcaaaatatgcatgtaagagtctatct |
31607882 |
T |
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| Q |
214 |
taagtcaacaatgaaggctcc |
234 |
Q |
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||| ||||||||||||||||| |
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| T |
31607883 |
taattcaacaatgaaggctcc |
31607903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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