View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4980-Insertion-1 (Length: 1005)
Name: NF4980-Insertion-1
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 602; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 6 - 671
Target Start/End: Complemental strand, 18220088 - 18219423
Alignment:
| Q |
6 |
catcaatgaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggt |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18220088 |
catcaatgaagcaacttgacgataaactcgtggaggggtgcatgaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggt |
18219989 |
T |
|
| Q |
106 |
ccatgttgacattcacgtaccaaattatccaagaatgattctagattctctttcaagtttttaaactcactctttatggaattttgataacattcaactt |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18219988 |
ccatgctgacattcacgtaccaaattatcccagaatgattctagattctctttcaagtttttaaactccttctttatggaattttgataacattcaactt |
18219889 |
T |
|
| Q |
206 |
caccacnnnnnnnngcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatac |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18219888 |
caccacttttttttgcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatac |
18219789 |
T |
|
| Q |
306 |
ctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgtta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18219788 |
ctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgtta |
18219689 |
T |
|
| Q |
406 |
cctttgattgtttcaaacaaagtctgatcagtaggtttaagcgtcgccctagcagttcctttgttagcacgatttcgcttcgatttaggaaccggaagtg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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|
| T |
18219688 |
cctttgattgtttcaaacaaagtctgatcagtaggtttaagcgtcgccccagcagttcctttgttagcacgattttgcttcgatttaggaaccggacgtg |
18219589 |
T |
|
| Q |
506 |
cttcttcggaatcttccggcaaactttcatgttccgccatatctacatcggtatcgatttcctttggcggttgctttagaggtctacccctcttgaaacg |
605 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
18219588 |
cttcttcgaaatcttccggcaaactttcatgttccgccatatctacatcggtatcgatttcctttggcggttgctttagaggtctacccctcttggaacg |
18219489 |
T |
|
| Q |
606 |
acgagttgaaggtggaggttgatcttccatgacctaaagattctgcaacgcaaacgcataaagcgg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18219488 |
acgagttgaaggtggaggttgatcttccatgacctaaagattctgcaacgcaaacgcataaagcgg |
18219423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 6 - 521
Target Start/End: Original strand, 18145573 - 18146088
Alignment:
| Q |
6 |
catcaatgaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggt |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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|
| T |
18145573 |
catcaatgaagcaacttgacgataaactcgtggaggggtgcaagaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaaaaatggt |
18145672 |
T |
|
| Q |
106 |
ccatgttgacattcacgtaccaaattatccaagaatgattctagattctctttcaagtttttaaactcactctttatggaattttgataacattcaactt |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18145673 |
ccatgctgacattcacgtaccaaattatccaagaatgattctagattctctttcaagcttttaaactcactctttatggaattttgataacattcaactt |
18145772 |
T |
|
| Q |
206 |
caccacnnnnnnnngcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatac |
305 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18145773 |
caccacttttttttgcatagttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacatac |
18145872 |
T |
|
| Q |
306 |
ctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccgtta |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18145873 |
ctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagtttgccgtta |
18145972 |
T |
|
| Q |
406 |
cctttgattgtttcaaacaaagtctgatcagtaggtttaagcgtcgccctagcagttcctttgttagcacgatttcgcttcgatttaggaaccggaagtg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||| || | | |
|
|
| T |
18145973 |
cctttgattgtttcaaacaaagtctgatcagtaggtttaagagtagccctagcagttcctttgttggcacgatttcgctttgattttggaacctgacgcg |
18146072 |
T |
|
| Q |
506 |
cttcttcggaatcttc |
521 |
Q |
| |
|
||||||| || ||||| |
|
|
| T |
18146073 |
cttcttcagattcttc |
18146088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 786 - 969
Target Start/End: Complemental strand, 18219308 - 18219119
Alignment:
| Q |
786 |
caactaagtcatctgatttaaaaattatttattaaaatcaaagtcatataactatattatctcaaatatctcttaaaatattggtataatatatcaaca- |
884 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18219308 |
caactaagtcatctgatttaaaaattatttataaaaatcaaagtcatataactatattatctcaaatatctcttaa-----tggtataatatatcaacaa |
18219214 |
T |
|
| Q |
885 |
------actttcgcatcctttcgatttggttg-ttcaatctatttttccatcgtttc-aagc-aaaacctctctaattgaatc-agtttatgcaa |
969 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
18219213 |
ctttcgactttcgcatcctttcgatttggttgtttcaatctatttttccatcgtttcaaagcaaaaacctctctaattgaatcaagtttatgcaa |
18219119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 562 - 663
Target Start/End: Original strand, 18146107 - 18146217
Alignment:
| Q |
562 |
atttcctttggcggttgctttagaggtctacccctcttgaaacgacgagttga---------aggtggaggttgatcttccatgacctaaagattctgca |
652 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
18146107 |
atttcctttggtggttgcttcagaggtcttcccctcttggaacgacgagttgatgctttggaaggtagaggttgatcttccatgacctaaagcttctgca |
18146206 |
T |
|
| Q |
653 |
acgcaaacgca |
663 |
Q |
| |
|
|||||||||| |
|
|
| T |
18146207 |
tcgcaaacgca |
18146217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 4e-47; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 49 - 209
Target Start/End: Original strand, 43842591 - 43842751
Alignment:
| Q |
49 |
gaaagtgcaatgatgtacttcatgcacttttcaaataaaactttgtcaaacaaaggtccatgttgacattcacgtaccaaattatccaagaatgattcta |
148 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||| | ||||||||| |||||||| ||||||||||| |||||||||||| ||||||| |||| |
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|
| T |
43842591 |
gaaagtgcaatgatgtagtccatgcacttgtcaaataaaacctggtcaaacaatggtccatgctgacattcacggaccaaattatcccagaatgactcta |
43842690 |
T |
|
| Q |
149 |
gattctctttcaagtttttaaactcactctttatggaattttgataacattcaacttcacc |
209 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
43842691 |
gattctctttgaagtttttaaactccttctttttggaattttgataatcttcaacttcacc |
43842751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 303 - 413
Target Start/End: Original strand, 43843673 - 43843783
Alignment:
| Q |
303 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccg |
402 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
43843673 |
tacctcaaacagcattgtcaagagctcaaccatagcagatcttggatccttttcgtagctttcaacccaaagtttgaccacatgaggaataagttttccg |
43843772 |
T |
|
| Q |
403 |
ttacctttgat |
413 |
Q |
| |
|
||||||||||| |
|
|
| T |
43843773 |
ttacctttgat |
43843783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 423 - 599
Target Start/End: Original strand, 43844129 - 43844305
Alignment:
| Q |
423 |
caaagtctgatcagtaggtttaagcgtcgccctagcagttcctttgttagcacgatttcgcttcgatttaggaaccggaagtgcttcttcggaatcttcc |
522 |
Q |
| |
|
|||||||| |||||||||||||||||| | |||| |||||||| ||| ||||||||||||||||||| |||||||| | | ||| |||||||||||| |
|
|
| T |
43844129 |
caaagtctcatcagtaggtttaagcgtagtgctagtagttccttctttaacacgatttcgcttcgatttctgaaccggacgaggttcgtcggaatcttcc |
43844228 |
T |
|
| Q |
523 |
ggcaaactttcatgttccgccatatctacatcggtatcgatttcctttggcggttgctttagaggtctacccctctt |
599 |
Q |
| |
|
||| |||| || | |||||||||||||||||| ||||||||||| ||||||||||| |||||||||| ||||| |
|
|
| T |
43844229 |
ggcgaactctcccgctccgccatatctacatcgacgtcgatttccttcggcggttgcttgggaggtctacctctctt |
43844305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 224 - 303
Target Start/End: Original strand, 43843398 - 43843477
Alignment:
| Q |
224 |
agttgacaagagcaacaacaacatcattaacgttaatctcatgcatgagaacccttttgtcgtgaaatttggctccacat |
303 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43843398 |
agttgacaagagcaacaacaacatcatcaacgtcaatctcatgcatgagatcccttttgtcgtgaaatttggctccacat |
43843477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 613 - 654
Target Start/End: Original strand, 43844427 - 43844468
Alignment:
| Q |
613 |
gaaggtggaggttgatcttccatgacctaaagattctgcaac |
654 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43844427 |
gaaggtggaggttgatcttccatgacctaaagcttctgcaac |
43844468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 43842457 - 43842497
Alignment:
| Q |
6 |
catcaatgaagcaacttgacgataaactcgtggaggggtgc |
46 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43842457 |
catcaatgaagcaacttgacgataaactcttggaggggtgc |
43842497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 303 - 413
Target Start/End: Complemental strand, 19862897 - 19862787
Alignment:
| Q |
303 |
tacctcaaacagcattgtcaagagttcaaccatagcagattttggatctttttcatagctttcaacccaaagttttactacatgaggaataagttttccg |
402 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| |||||| || |||| ||||| |||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
19862897 |
tacctcaaccagcgttgtcaagagttcatccatcgcagatctttgatccttttcgtagctttcaacccaaagtttgacagcatgaggaataagtttgcca |
19862798 |
T |
|
| Q |
403 |
ttacctttgat |
413 |
Q |
| |
|
||| ||||||| |
|
|
| T |
19862797 |
ttatctttgat |
19862787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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