View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4980-Insertion-3 (Length: 815)
Name: NF4980-Insertion-3
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-3 |
 | |
|
| [»] scaffold0137 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 531; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 3896743 - 3897297
Alignment:
| Q |
8 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896743 |
attttaccatgtcatcaaaagtccagaggatgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
3896842 |
T |
|
| Q |
108 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3896843 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
3896942 |
T |
|
| Q |
208 |
tgataagaataggcctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtgtccgtgcttca |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3896943 |
tgataagaataggtctttgttcattcaccgacacatataattacatgcaatattattaattttctcaaactattatcattgttgacgtatccgtgcttca |
3897042 |
T |
|
| Q |
308 |
tagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagat |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897043 |
tagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaagat |
3897142 |
T |
|
| Q |
408 |
tggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3897143 |
tggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatctt |
3897242 |
T |
|
| Q |
508 |
ataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
562 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
3897243 |
ataggatgagaagatcgaagatctgccgcagcaatatccttcaaacaatcacaac |
3897297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 656 - 815
Target Start/End: Original strand, 3898713 - 3898872
Alignment:
| Q |
656 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacccttcat |
755 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3898713 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
3898812 |
T |
|
| Q |
756 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccag |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3898813 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccag |
3898872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 656 - 814
Target Start/End: Complemental strand, 46283571 - 46283413
Alignment:
| Q |
656 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacccttcat |
755 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||| |
|
|
| T |
46283571 |
cctgtgcagctttgtaagacaacatagtatcctcagcagcagattttttctcatcaccaatcttaaactcagccaaatacctatgataatcacctttcat |
46283472 |
T |
|
| Q |
756 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatcca |
814 |
Q |
| |
|
|| |||||||| |||| || | |||||||| ||||| ||||||||||| |||||||||| |
|
|
| T |
46283471 |
cttataataaaaaaccttactttcactcgaagaagctgaaggtataagattcgaatcca |
46283413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 399 - 548
Target Start/End: Complemental strand, 46283795 - 46283646
Alignment:
| Q |
399 |
aaacaagattggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaa |
498 |
Q |
| |
|
||||||||| ||||||||||||||||| | ||||||||| | ||| |||| | | || |||||||| ||||||||||| |||||||| | ||||||| |
|
|
| T |
46283795 |
aaacaagatcagattaacacaaacctgtttggccatgtcacaagctttgtcagattgattgagaatttcgtaatagaaaacagagaaattgagagccaaa |
46283696 |
T |
|
| Q |
499 |
cccaatcttataggatgagaagatcgaagatccgccgtagcaatatcctt |
548 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| | |||||||||||| |
|
|
| T |
46283695 |
cccaatcttataggatgagttgatggaagatccgcagcagcaatatcctt |
46283646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 46285180 - 46285038
Alignment:
| Q |
20 |
catcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttg---agctcattacgtgc |
116 |
Q |
| |
|
||||| ||||||| ||||||| ||||| ||||||||||||||| || ||||||||||||||| |||| ||||||||| || || ||| | ||| |
|
|
| T |
46285180 |
catcagaagtccaaagggtgaggttgtctctcaaaagttgcattataagtgtgctgtctttgtaggattcttctcccaatgtgtccagttcagcaattgc |
46285081 |
T |
|
| Q |
117 |
ttcatctaaagcctatcaacaaggaaaagaaaattgattcagt |
159 |
Q |
| |
|
||| || |||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
46285080 |
ttcctcaaaagcctatccagaaggaaaagaatattgtttcagt |
46285038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 562
Target Start/End: Original strand, 4397 - 4953
Alignment:
| Q |
8 |
attttaccatgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4397 |
attttaccgtgtcatcaaaagtccagagggtgatgttgtttctcaaaagttgcatgcgaaccgtgctgtctttgtagtattcatctcccaatttgagctc |
4496 |
T |
|
| Q |
108 |
attacgtgcttcatctaaagcctatcaacaaggaaaagaaaattgattcagtacatgtacaagccaaacatgaacagaaaagagagacacataaagcatt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4497 |
attacgtgcttcatctaaagcctatcaacaaggaaaataaaattgattcagtacaagtacaagccaaacatgaacagaaaagagagacacataaagcatt |
4596 |
T |
|
| Q |
208 |
tgataagaataggcctttgttcattcaccgacacatataattacatgc--aatattattaattttctcaaactattatcattgttgacgtgtccgtgctt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4597 |
tgataagaataggcctttgttcattcacctacacatataattacatgcttaatattattaattttctcaaactattatcattgttgacgtatccgtgctt |
4696 |
T |
|
| Q |
306 |
catagaaaacattcatcacaaattaaaggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaag |
405 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4697 |
catagaaaacattcatcacaaattaatggaagaacacaactattagtataacttcatagtgcatatatccctcatagtcattgcaaaacaaacaaacaag |
4796 |
T |
|
| Q |
406 |
attggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4797 |
attggattaacacaaacctgtctagccatgtcaagaccttcgtcaaaccggttaagaatttcataatagaaaaccgagaaattcaaagccaaacccaatc |
4896 |
T |
|
| Q |
506 |
ttataggatgagaagatcgaagatccgccgtagcaatatccttcaaacaatcacaac |
562 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
4897 |
ttataggatgagaagatcgaagatccgcagcagcaatatccttcaaacaatcacaac |
4953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 656 - 815
Target Start/End: Original strand, 5044 - 5203
Alignment:
| Q |
656 |
cctgtgcagccttgtaagacaaaataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacccttcat |
755 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5044 |
cctgtgcagccttgtaagacaagataatatcctcaacagcagattttttgtcatcaccaatcttaaactcagccatatacctttgataatcacctttcat |
5143 |
T |
|
| Q |
756 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccag |
815 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5144 |
ctgataataaacaaccctaatctcactcgatgaagcagaaggtataagtttcgaatccag |
5203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 39356413 - 39356450
Alignment:
| Q |
466 |
tcataatagaaaaccgagaaattcaaagccaaacccaa |
503 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
39356413 |
tcataatagaaaactgagaaattcaaagccagacccaa |
39356450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University