View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4980-Insertion-4 (Length: 724)
Name: NF4980-Insertion-4
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-4 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 677; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 8 - 724
Target Start/End: Complemental strand, 26791110 - 26790394
Alignment:
| Q |
8 |
gggatgtggcatgatgaataatttacattacattactgtcaatgtttaaggtcttgtaaatgaaatgacatagggactgctggtgtatggagaattttgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26791110 |
gggatgtggcatgatgaataatttacattacattactgtcaatgtttaaggtcctgtaaatgaaatgacatagggactgctggtgtatggagaatttcgg |
26791011 |
T |
|
| Q |
108 |
cgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagtctcaaaggatggaaattcctatatctctc |
207 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791010 |
cgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagtctcaaaggatggaaattcctatatctctc |
26790911 |
T |
|
| Q |
208 |
caatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgttacattggttttattttaatatatgg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790910 |
caatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatatgatgttacattggttttattttaatatatgg |
26790811 |
T |
|
| Q |
308 |
tgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26790810 |
tgttcttggtataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaa |
26790711 |
T |
|
| Q |
408 |
aattgctatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaa |
507 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26790710 |
aattgttatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaattcatcaa |
26790611 |
T |
|
| Q |
508 |
tgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatac |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
26790610 |
tgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtgcacgtac |
26790511 |
T |
|
| Q |
608 |
acacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcac |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26790510 |
acacatttgtgttctattgcatattgttacctgcaactgttatggttcctgaggttgtggtccctaaatggggaactgtttatgtcccttccatcatcac |
26790411 |
T |
|
| Q |
708 |
ccttcttaaagctgttg |
724 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
26790410 |
ccttcttaaagctgttg |
26790394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 77 - 724
Target Start/End: Complemental strand, 26817748 - 26817104
Alignment:
| Q |
77 |
atagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
176 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
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| T |
26817748 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatatggacctggctgtacgtgcta |
26817649 |
T |
|
| Q |
177 |
gtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatat |
276 |
Q |
| |
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|||| |||||||||||||| |||| || | |||||| |||||||| | || || ||| |||||||| |||| |||||| |||||| | |
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| T |
26817648 |
gtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaac------tctcgtctctttacatgtt---atgttaacaaaattt |
26817558 |
T |
|
| Q |
277 |
ga-tgttacattggttttattttaatatatggtgttcttggtata---------ggttaaaaacgaattaccaagtactttaaaggcctataggtaccaa |
366 |
Q |
| |
|
| |||||||||| |||||||| |||||| | |||||||| |||| ||||||||| ||||| |||||||| || ||||| |||||||||||| |
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| T |
26817557 |
taatgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaa |
26817458 |
T |
|
| Q |
367 |
caacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgctatggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatat |
466 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| |||||||||||| | | ||||||||||| | || |||||| ||||| |
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| T |
26817457 |
caacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattatt---ttaatccttgt-tgaattc |
26817362 |
T |
|
| Q |
467 |
attggccaattataatataatttattatatgaattcatcaatgtgcttgtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgt |
566 |
Q |
| |
|
| | | | |||||||| ||| |||| || | ||||||| |||| |||||||||| | | |||||||||||||||||||| ||||||| || ||||||| |
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|
| T |
26817361 |
actagtcgattataatttaacttatgatctaaattcatgcatgtccttgtttaatatgtctattgcagaaagtgtctttgtggaagaagttatatattgt |
26817262 |
T |
|
| Q |
567 |
ttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtg |
666 |
Q |
| |
|
|| || |||||||||| ||| |||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||| |
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| T |
26817261 |
ttgcaattttttctttgttcaaaagattgtggtgcacatacacacatttgtgttctattgcgttctgttacctgcaactgttatggtgcctgagattgtg |
26817162 |
T |
|
| Q |
667 |
gttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttg |
724 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26817161 |
gtccctaaatggggaactgtttatgtcccttccatcatcacccttctaaaagctgttg |
26817104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 12 - 238
Target Start/End: Complemental strand, 26784779 - 26784554
Alignment:
| Q |
12 |
tgtggcatgatgaataatttacattacattactgtcaatgtttaaggtcttgtaaatgaaatgacatagggactgctggtgtatggagaattttggcgtt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| | ||||| ||||||||||||||||||||||| ||||| |||||||||| |||||| |
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|
| T |
26784779 |
tgtggcatgatgaataatttacattacattacagtcaat-tttgtgttcttgaaaatgaaatgacatagggactgcgggtgtgtggagaatttcggcgtt |
26784681 |
T |
|
| Q |
112 |
gaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgctagtctcaaaggatggaaattcctatatctctccaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||| |||||| | | |||||||| |||||| |||||||||||||| |||| ||||||||| |
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|
| T |
26784680 |
gaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaagtctcgaaggatggaaattcttatacctctccaat |
26784581 |
T |
|
| Q |
212 |
ttacaggttccattttcttaatccaat |
238 |
Q |
| |
|
|||||||||||||| |||||| |||| |
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|
| T |
26784580 |
atacaggttccatttacttaattcaat |
26784554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 72 - 233
Target Start/End: Complemental strand, 26831424 - 26831263
Alignment:
| Q |
72 |
atgacatagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
171 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26831424 |
atgacacagggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacg |
26831325 |
T |
|
| Q |
172 |
tgctagtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaat |
233 |
Q |
| |
|
||| ||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||||||| |
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|
| T |
26831324 |
tgccagtctcaaaggatggaaattcttatacctctccgatttgcaggttcgattttcttaat |
26831263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 317 - 710
Target Start/End: Complemental strand, 26784431 - 26784040
Alignment:
| Q |
317 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgctat |
416 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| |||||||| |||||||||||||||||||||||||| || || ||||||||||| ||||| ||| |
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|
| T |
26784431 |
tataggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgattat |
26784332 |
T |
|
| Q |
417 |
ggagattgtcacaagcaaggtaaaaacaaggttgatcctttaatgaatatattggccaattataatataatttattatatgaat--tcatcaatgtgctt |
514 |
Q |
| |
|
||||||| |||||| |||||||| ||||| || || ||||||| | | | | ||| ||| ||| |||| ||| ||| |||| || |||| |
|
|
| T |
26784331 |
ggagattctcacaaacaaggtaatt----ggttggtctcttgatgaatacactacctacttacaatttaaattatgataaaaatattcattcatctgcta |
26784236 |
T |
|
| Q |
515 |
gtttaattttaccattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatt |
614 |
Q |
| |
|
|||||||| | || ||||||||||||||||| |||||| | |||| |||||||||||||||||| | || ||||||||||| || ||| ||||||| |
|
|
| T |
26784235 |
atttaatttgtctatggcagaaagtgtctttgtggaagaaaacatatatggtttacagttttttctttgtccggaagattgtggttcacataaacacatt |
26784136 |
T |
|
| Q |
615 |
tgtgttctattgcatattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcaccct |
710 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
26784135 |
tgtgttatattgcattgtgttacctgcaactgttatggtgcctgagattgtggtccctaaatggggaactgtttatatccctaccatcatcaccct |
26784040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 527 - 724
Target Start/End: Complemental strand, 26830944 - 26830747
Alignment:
| Q |
527 |
cattgcagaaagtgtctttgttgaagaagctacatattgtttacagttttttctttattcgaaagattgtggtccatatacacacatttgtgttctattg |
626 |
Q |
| |
|
||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||| |||||||||| ||| || |||||||||| |||||||| |
|
|
| T |
26830944 |
cattgcagaaagtgtctttgtggaagaagatatatgttgtttacagttttttctttgttcggaagattgtggcccacatcaacacatttgttttctattg |
26830845 |
T |
|
| Q |
627 |
catattgttacctgcaactgttatggtacctgaggttgtggttcctaaatggggaactgtttatgtcccttccatcatcacccttcttaaagctgttg |
724 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||| | || ||||||| |
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|
| T |
26830844 |
cattgtgttacctgcaactgttatggtacctgaggttgtggtccctaaatggggagctgtttatatcccttccatcatcacccttttaaatgctgttg |
26830747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 317 - 439
Target Start/End: Complemental strand, 26831152 - 26831030
Alignment:
| Q |
317 |
tataggttaaaaacgaattaccaagtactttaaaggcctataggtaccaacaacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgctat |
416 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || |
|
|
| T |
26831152 |
tataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggtaat |
26831053 |
T |
|
| Q |
417 |
ggagattgtcacaagcaaggtaa |
439 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
26831052 |
ggagattgtcacaaacaaggtaa |
26831030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 77 - 201
Target Start/End: Original strand, 41919711 - 41919835
Alignment:
| Q |
77 |
atagggactgctggtgtatggagaattttggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
176 |
Q |
| |
|
||||||||||| || || |||||||||| |||| |||| || |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| | |||| |
|
|
| T |
41919711 |
atagggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagcta |
41919810 |
T |
|
| Q |
177 |
gtctcaaaggatggaaattcctata |
201 |
Q |
| |
|
|||||||||| ||||| ||| |||| |
|
|
| T |
41919811 |
gtctcaaagggtggaagttcttata |
41919835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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