View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4980-Insertion-5 (Length: 612)

Name: NF4980-Insertion-5
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4980-Insertion-5
NF4980-Insertion-5
[»] chr5 (19 HSPs)
chr5 (176-470)||(40197681-40197972)
chr5 (7-119)||(40197512-40197624)
chr5 (176-233)||(3247746-3247803)
chr5 (558-606)||(29692403-29692451)
chr5 (551-606)||(12877697-12877752)
chr5 (551-604)||(8278294-8278347)
chr5 (551-604)||(16773811-16773864)
chr5 (551-607)||(21086718-21086774)
chr5 (551-607)||(30883214-30883270)
chr5 (551-603)||(40281112-40281164)
chr5 (567-607)||(43442216-43442256)
chr5 (199-234)||(5775642-5775677)
chr5 (558-604)||(1410678-1410724)
chr5 (558-604)||(14495824-14495870)
chr5 (570-607)||(17028280-17028317)
chr5 (567-604)||(29075801-29075838)
chr5 (567-607)||(25627077-25627117)
chr5 (551-603)||(30109328-30109380)
chr5 (551-607)||(34984810-34984866)
[»] chr7 (24 HSPs)
chr7 (176-236)||(10701634-10701694)
chr7 (176-234)||(28749911-28749969)
chr7 (551-603)||(48771942-48771994)
chr7 (551-604)||(2446312-2446365)
chr7 (565-606)||(43590925-43590966)
chr7 (551-607)||(22760867-22760923)
chr7 (548-607)||(23595730-23595789)
chr7 (565-604)||(37085568-37085607)
chr7 (568-606)||(20952166-20952204)
chr7 (559-604)||(9871305-9871350)
chr7 (551-604)||(20335850-20335903)
chr7 (176-233)||(24613183-24613240)
chr7 (558-603)||(33460443-33460488)
chr7 (181-234)||(44592301-44592354)
chr7 (567-607)||(7721389-7721429)
chr7 (551-607)||(15137557-15137613)
chr7 (551-607)||(17041028-17041084)
chr7 (567-607)||(18363716-18363756)
chr7 (549-601)||(19612661-19612713)
chr7 (551-603)||(23301622-23301674)
chr7 (567-607)||(26459426-26459466)
chr7 (551-603)||(37233592-37233644)
chr7 (567-607)||(41519280-41519320)
chr7 (551-607)||(43215188-43215244)
[»] chr3 (27 HSPs)
chr3 (184-231)||(51672506-51672553)
chr3 (565-606)||(14339628-14339669)
chr3 (182-231)||(24924610-24924659)
chr3 (551-604)||(36720385-36720438)
chr3 (551-606)||(4222145-4222200)
chr3 (558-607)||(17554782-17554831)
chr3 (558-607)||(18319184-18319233)
chr3 (176-241)||(52201287-52201352)
chr3 (551-603)||(2597240-2597292)
chr3 (548-604)||(45308921-45308977)
chr3 (567-607)||(46518648-46518688)
chr3 (176-238)||(11083204-11083267)
chr3 (551-606)||(31295459-31295514)
chr3 (558-604)||(4844530-4844576)
chr3 (558-604)||(4870226-4870272)
chr3 (551-597)||(24481585-24481631)
chr3 (558-604)||(30194981-30195027)
chr3 (551-604)||(31520624-31520677)
chr3 (548-604)||(2667863-2667919)
chr3 (567-607)||(7975438-7975478)
chr3 (567-607)||(8075143-8075183)
chr3 (551-607)||(17108914-17108970)
chr3 (567-607)||(27093377-27093417)
chr3 (567-607)||(30311326-30311366)
chr3 (567-607)||(32651454-32651494)
chr3 (551-607)||(47810760-47810816)
chr3 (568-604)||(51903897-51903933)
[»] chr4 (25 HSPs)
chr4 (176-234)||(27924045-27924103)
chr4 (176-233)||(32004408-32004465)
chr4 (176-231)||(38179832-38179887)
chr4 (184-235)||(55292354-55292405)
chr4 (192-238)||(16467926-16467972)
chr4 (551-604)||(19238596-19238649)
chr4 (176-220)||(779744-779788)
chr4 (567-607)||(31759674-31759714)
chr4 (567-607)||(38869788-38869828)
chr4 (551-607)||(51250538-51250594)
chr4 (548-606)||(4911249-4911307)
chr4 (551-601)||(40285627-40285677)
chr4 (565-607)||(49576910-49576952)
chr4 (567-604)||(13015447-13015484)
chr4 (558-607)||(21775938-21775987)
chr4 (567-604)||(30938238-30938275)
chr4 (176-229)||(46737246-46737299)
chr4 (574-607)||(51969044-51969077)
chr4 (569-606)||(53496899-53496936)
chr4 (567-607)||(4249197-4249237)
chr4 (567-607)||(8030220-8030260)
chr4 (567-607)||(31826629-31826669)
chr4 (181-233)||(35803572-35803624)
chr4 (567-607)||(37109367-37109407)
chr4 (551-603)||(52254424-52254476)
[»] chr2 (24 HSPs)
chr2 (184-234)||(37807232-37807282)
chr2 (553-601)||(15825735-15825783)
chr2 (567-607)||(16918594-16918634)
chr2 (558-607)||(30838076-30838125)
chr2 (567-607)||(17737640-17737680)
chr2 (551-603)||(29197396-29197448)
chr2 (567-607)||(29503291-29503331)
chr2 (565-604)||(7799054-7799093)
chr2 (551-601)||(6760891-6760941)
chr2 (548-606)||(12801290-12801348)
chr2 (565-607)||(23052539-23052581)
chr2 (568-606)||(23465938-23465976)
chr2 (176-234)||(37985142-37985200)
chr2 (567-604)||(1729836-1729873)
chr2 (558-607)||(11251098-11251147)
chr2 (554-603)||(18259737-18259786)
chr2 (551-604)||(19016035-19016088)
chr2 (551-600)||(26545844-26545893)
chr2 (551-603)||(7667489-7667541)
chr2 (551-607)||(12086145-12086201)
chr2 (567-607)||(19322788-19322828)
chr2 (551-607)||(30359658-30359714)
chr2 (551-607)||(37480079-37480135)
chr2 (567-607)||(42327411-42327451)
[»] chr1 (22 HSPs)
chr1 (176-234)||(15646123-15646181)
chr1 (551-604)||(45235398-45235451)
chr1 (551-607)||(41508835-41508891)
chr1 (554-607)||(8177198-8177251)
chr1 (551-607)||(40088018-40088072)
chr1 (565-606)||(52116798-52116839)
chr1 (551-607)||(15786336-15786392)
chr1 (567-607)||(31794280-31794320)
chr1 (567-607)||(44046164-44046204)
chr1 (551-606)||(952515-952570)
chr1 (182-231)||(14321091-14321140)
chr1 (567-604)||(17410251-17410288)
chr1 (551-600)||(18037636-18037685)
chr1 (551-604)||(21268012-21268065)
chr1 (178-231)||(24902307-24902360)
chr1 (567-607)||(6122814-6122854)
chr1 (562-606)||(10150886-10150930)
chr1 (551-607)||(19528343-19528399)
chr1 (567-607)||(33700789-33700829)
chr1 (206-238)||(33776675-33776707)
chr1 (558-606)||(51703790-51703838)
chr1 (567-603)||(52336794-52336830)
[»] scaffold0194 (1 HSPs)
scaffold0194 (548-607)||(13062-13121)
[»] chr6 (15 HSPs)
chr6 (176-223)||(9062916-9062963)
chr6 (567-606)||(34293833-34293872)
chr6 (176-242)||(27133904-27133970)
chr6 (176-229)||(8307906-8307959)
chr6 (551-604)||(33549108-33549161)
chr6 (548-604)||(6776626-6776682)
chr6 (567-607)||(28363957-28363997)
chr6 (548-607)||(10338190-10338249)
chr6 (565-604)||(21418488-21418527)
chr6 (176-234)||(23898820-23898878)
chr6 (558-604)||(24641209-24641255)
chr6 (551-601)||(30127404-30127454)
chr6 (551-604)||(6758441-6758494)
chr6 (551-604)||(31623010-31623063)
chr6 (567-607)||(12188319-12188359)
[»] scaffold0291 (1 HSPs)
scaffold0291 (566-607)||(2486-2527)
[»] scaffold0258 (1 HSPs)
scaffold0258 (551-604)||(15342-15395)
[»] chr8 (17 HSPs)
chr8 (551-604)||(968366-968419)
chr8 (551-604)||(35641920-35641973)
chr8 (176-236)||(11517630-11517690)
chr8 (551-607)||(28783064-28783120)
chr8 (551-607)||(36205199-36205255)
chr8 (558-601)||(3058071-3058114)
chr8 (567-601)||(7286227-7286261)
chr8 (554-604)||(9555476-9555526)
chr8 (565-607)||(23361665-23361707)
chr8 (567-605)||(30483902-30483940)
chr8 (570-607)||(3305204-3305241)
chr8 (567-607)||(2203512-2203552)
chr8 (567-607)||(11819796-11819836)
chr8 (567-607)||(13129688-13129728)
chr8 (567-607)||(27750750-27750790)
chr8 (551-603)||(29431015-29431067)
chr8 (567-607)||(44780130-44780170)
[»] scaffold0172 (1 HSPs)
scaffold0172 (551-607)||(15793-15849)
[»] scaffold0299 (1 HSPs)
scaffold0299 (565-604)||(11546-11585)
[»] scaffold0024 (1 HSPs)
scaffold0024 (176-234)||(36236-36294)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 176 - 470
Target Start/End: Original strand, 40197681 - 40197972
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtgtcttaagatagcattttccattttgtttatgtgaattatta 275  Q
    |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  40197681 cattccacttttcactaatttccaatgcataatttctatattaatcttcttaactagtgttttaagttagcattttccattttgtttatgtgaattatta 40197780  T
Q  276 tatggatcttttnnnnnnnnnnnnntttgcacacatctcttcgaagtgtttgagttagtcttgttttcccccaactatatagcaagccttaatacggaat 375  Q
    | || ||||||              |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40197781 tttgcatcttt--aaaaaatatatatttgcacacatctcttcgaagtgtttgagttagtcttgttttcccc-aactatatagcaagccttaatacggaat 40197877  T
Q  376 aagtttgtggaaaccaactttactttctcctcacaccattcatgatagagatcaacgaagggaataatgtttcatagacatttatcactccactg 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40197878 aagtttgtggaaaccaactttactttctcctcacaccattcatgatagagatcaacgaagggaataatgtttcatagacatctatcactccactg 40197972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 7 - 119
Target Start/End: Original strand, 40197512 - 40197624
Alignment:
Q  7 aaaaacctcaaagttccattctagttcaacaagaggaaaaatcaaaactgccacgaaaagttatgtttgtatattttgtttggattttgctaagggcatt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40197512 aaaaacctcaaagttccattctagttcaacaagaggaaaaatcaaaactgccacgaaaagttatgtttgtatattttgtttggattttgctaagggcaat 40197611  T
Q  107 gattaagaatgtc 119  Q
    |||||||||||||    
T  40197612 gattaagaatgtc 40197624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 3247746 - 3247803
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagt 233  Q
    |||| |||||||||| ||||| |||||||||| |||||||||||| ||||||||||||    
T  3247746 cattacacttttcaccaatttttaatgcataacttctatattaatcttcttaactagt 3247803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 558 - 606
Target Start/End: Complemental strand, 29692451 - 29692403
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||||    
T  29692451 gttggtctggtggtattggattgggatctgggagtgtgctcctcctcaa 29692403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 12877697 - 12877752
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    ||||||||||||| | |||| |||||||||||||||||||||||| | ||||||||    
T  12877697 cacttgagttggtctagtggcattggtttgggatttgggagtgtgtttctcctcaa 12877752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 8278347 - 8278294
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| || ||||||||| |||||| ||||||||||||||||||||    
T  8278347 cacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctc 8278294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 16773811 - 16773864
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||||||| |||||||||||  ||||||  |||||||||||||||||||    
T  16773811 cacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctc 16773864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 21086718 - 21086774
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||||||| || |||||||| ||| |||| ||| ||||||||||||||||||    
T  21086718 cacttgagttggtctgatggtattgatttaggatctggcagtgtgctcctcctcaag 21086774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 30883270 - 30883214
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| | |||||||||| ||||||  ||||||||||||||||||||||    
T  30883270 cacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaag 30883214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 40281164 - 40281112
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||||| |||||||||| |||||||| || |||||||||||||||    
T  40281164 cacttgggttggttaggtggtattgatttgggatatgagagtgtgctcctcct 40281112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 43442216 - 43442256
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  43442216 gtggtattggtttgagatctgggagtgtgctcctcctcaag 43442256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 5775642 - 5775677
Alignment:
Q  199 aatgcataatttctatattaatattcttaactagtg 234  Q
    |||||||||||||||||||||| |||||||||||||    
T  5775642 aatgcataatttctatattaatcttcttaactagtg 5775677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 1410724 - 1410678
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  1410724 gttggtctggtggtattgacttgggatatgggagtgtgctcctcctc 1410678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 14495870 - 14495824
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  14495870 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 14495824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 607
Target Start/End: Complemental strand, 17028317 - 17028280
Alignment:
Q  570 gtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  17028317 gtattgggttgggacttgggagtgtgctcctcctcaag 17028280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 29075801 - 29075838
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  29075801 gtggtattggcttgggatctgggagtgtgctcctcctc 29075838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 25627077 - 25627117
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  25627077 gtggtattggcttggaacttgggagtgtgctcctcctcaag 25627117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 30109380 - 30109328
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||| ||||||||||||| ||| ||  ||||||||||||||||||    
T  30109380 cacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctcct 30109328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 34984810 - 34984866
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| | |||||||||| |||| |  ||||||||||||||||||||||    
T  34984810 cacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaag 34984866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 10701694 - 10701634
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtgtc 236  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||| |||||| ||||||||    
T  10701694 cattcaacttttcactaatttctaatatataatttctatattaatcttcttatctagtgtc 10701634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 28749969 - 28749911
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||| ||||||||  |||||| |||||||||||||||||||||| |||||||||||||    
T  28749969 cattctacttttcatcaatttccaatgcataatttctatattaatcttcttaactagtg 28749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 48771942 - 48771994
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||    
T  48771942 cacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctcct 48771994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 2446312 - 2446365
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| || ||||||||| |||||| ||||||||||||||||||||    
T  2446312 cacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctc 2446365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 43590925 - 43590966
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  43590925 tggtggtattggcttgggacttgggagtgtgctcctcctcaa 43590966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 22760867 - 22760923
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| |||||||||||  ||||||  ||||||||||||||||||||||    
T  22760867 cacttgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaag 22760923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 607
Target Start/End: Original strand, 23595730 - 23595789
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||| |||||| |||||||||||  ||| ||| | ||||||||||||||||||||    
T  23595730 actcacttgggttggtctggtggtattgacttgagatctcggagtgtgctcctcctcaag 23595789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 604
Target Start/End: Complemental strand, 37085607 - 37085568
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  37085607 tggtggtattggcttgggatttgggagtgtgctcatcctc 37085568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 568 - 606
Target Start/End: Complemental strand, 20952204 - 20952166
Alignment:
Q  568 tggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  20952204 tggtattggtttgggacctgggagtgtgctcctcctcaa 20952166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 604
Target Start/End: Complemental strand, 9871350 - 9871305
Alignment:
Q  559 ttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||| ||||| ||| || |||||||||||||||||||||||||||    
T  9871350 ttggtctggtgatatcggcttgggatttgggagtgtgctcctcctc 9871305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 20335903 - 20335850
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| | | |||||||| |||||| ||||||||||||||||||||    
T  20335903 cacttgggttggtctagaggtattggcttgggacttgggagtgtgctcctcctc 20335850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 24613240 - 24613183
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagt 233  Q
    ||||| ||||||||||||||   |||||| ||||||||||||| | ||||||||||||    
T  24613240 cattctacttttcactaattctcaatgcaaaatttctatattagttttcttaactagt 24613183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 603
Target Start/End: Complemental strand, 33460488 - 33460443
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    ||||||||||||||||||||||||||  | |||||||| |||||||    
T  33460488 gttggtttggtggtattggtttgggacctaggagtgtggtcctcct 33460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 44592354 - 44592301
Alignment:
Q  181 cacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    |||||||||| ||||| ||||||||||||| ||||| ||| || ||||||||||    
T  44592354 cacttttcaccaatttttaatgcataatttatatatcaatcttattaactagtg 44592301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 7721389 - 7721429
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||||  ||||||||| ||||||||||||    
T  7721389 gtggtattggtttgggacctgggagtgtactcctcctcaag 7721429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 15137557 - 15137613
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||  |||||||| ||  ||||||||| ||||||||||||||||||||    
T  15137557 cacttgggttggcctggtggtactgacttgggatttaggagtgtgctcctcctcaag 15137613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 17041084 - 17041028
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| | |||| ||||| ||||||| ||| ||||||||||||||||||    
T  17041084 cacttgggttggtctagtggcattggcttgggatctggaagtgtgctcctcctcaag 17041028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 18363716 - 18363756
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || ||| ||||||||||||||||||||||||||    
T  18363716 gtggtataggcttgagatttgggagtgtgctcctcctcaag 18363756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 601
Target Start/End: Complemental strand, 19612713 - 19612661
Alignment:
Q  549 ctcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    ||||||||||||||||| ||||| |||| ||||||| | | ||||||||||||    
T  19612713 ctcacttgagttggtttagtggtgttggcttgggatcttgaagtgtgctcctc 19612661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 23301674 - 23301622
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| |||||  |||||||||||  |||||| |||||||||||||||||||    
T  23301674 cacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctcct 23301622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 26459466 - 26459426
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  26459466 gtggtattggcttgggacctgggagtgtgctcctcctcaag 26459426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 37233644 - 37233592
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||  |||||| |||||| ||||||| ||||||||||||||||||    
T  37233644 cacttgggttgacttggtgatattggcttgggatgtgggagtgtgctcctcct 37233592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 41519320 - 41519280
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||  ||||||||| ||||||||||||||||||||    
T  41519320 gtggtattgacttgggatttaggagtgtgctcctcctcaag 41519280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 43215188 - 43215244
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| | |||||||||| ||||||  | ||||||||||||||||||||    
T  43215188 cacttgggttggtctagtggtattggcttgggacctcggagtgtgctcctcctcaag 43215244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 51672553 - 51672506
Alignment:
Q  184 ttttcactaatttctaatgcataatttctatattaatattcttaacta 231  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  51672553 ttttcaccaatttctaatgcataatttctatattaatcttcttaacta 51672506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 565 - 606
Target Start/End: Original strand, 14339628 - 14339669
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  14339628 tggtggtattggcttgggatttgggagtgtgctcctcctcaa 14339669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 24924610 - 24924659
Alignment:
Q  182 acttttcactaatttctaatgcataatttctatattaatattcttaacta 231  Q
    ||||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  24924610 acttttcaccaatttttaatgcataatttctatattaatcttcttaacta 24924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 36720385 - 36720438
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  36720385 cacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctc 36720438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 4222145 - 4222200
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||| ||||| || |||||||||| ||||||| |||||||||||||||||||||    
T  4222145 cacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaa 4222200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 17554782 - 17554831
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||||||||||||| ||||||  ||||||||||||| ||||||||    
T  17554782 gttggtttggtggtattggcttgggacctgggagtgtgctcttcctcaag 17554831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 18319233 - 18319184
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||| ||||||||||||||||||||  |||||||||||||||| |||||    
T  18319233 gttggcttggtggtattggtttgggacctgggagtgtgctcctcttcaag 18319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 52201352 - 52201287
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtgtcttaag 241  Q
    |||| ||||||| || |||||||||| || ||||| ||||||||| ||||||||||||| ||||||    
T  52201352 catttcactttttaccaatttctaatccaaaatttatatattaatcttcttaactagtgccttaag 52201287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 2597292 - 2597240
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| |||||| |||||||||||| || |||||| ||||||||||||||||    
T  2597292 cacttgggttggtctggtggtattggcttcggatttaggagtgtgctcctcct 2597240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 604
Target Start/End: Complemental strand, 45308977 - 45308921
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||| |||| | ||||||||||||||||||| ||| |||| |||||||||||    
T  45308977 actcacttgggttgttctggtggtattggtttgggacttgtgagtatgctcctcctc 45308921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 46518648 - 46518688
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  46518648 gtggtattggcttgggatctgggagtgtgctcctcctcaag 46518688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 238
Target Start/End: Complemental strand, 11083267 - 11083204
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaa-tattcttaactagtgtctt 238  Q
    ||||||| |||||||| ||||| | ||||||||||||||||||| | || ||||||||||||||    
T  11083267 cattccatttttcactcatttccattgcataatttctatattaattttttttaactagtgtctt 11083204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 31295459 - 31295514
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||| ||||||||| |||||||| |||||||| | | |||||||||||||||||    
T  31295459 cacttgggttggtttgatggtattgatttgggatctagaagtgtgctcctcctcaa 31295514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 4844576 - 4844530
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  4844576 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4844530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 4870272 - 4870226
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||||||||  ||||||| |||||||||||||||||||    
T  4870272 gttggtctggtggtattgacttgggatctgggagtgtgctcctcctc 4870226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 551 - 597
Target Start/End: Original strand, 24481585 - 24481631
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgct 597  Q
    ||||||||||||| | ||||||||||||||||| ||| |||||||||    
T  24481585 cacttgagttggtctagtggtattggtttgggacttgagagtgtgct 24481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 30194981 - 30195027
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| ||||||||||||||| ||| |||||||||||||| |||||    
T  30194981 gttggtctggtggtattggtttaggacttgggagtgtgctcatcctc 30195027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 31520677 - 31520624
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||  |||||| ||||| ||||||| |||||||||||||||||||    
T  31520677 cacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctc 31520624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 548 - 604
Target Start/End: Original strand, 2667863 - 2667919
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||| ||| |||||  |||||||||||| ||||||| ||||||||||||| |||||    
T  2667863 actcatttgggttggcctggtggtattggcttgggatctgggagtgtgctcttcctc 2667919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 7975438 - 7975478
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || ||||||| ||||||||||||||||||||||    
T  7975438 gtggtataggcttgggatctgggagtgtgctcctcctcaag 7975478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 8075183 - 8075143
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  8075183 gtggtataggcttgggacttgggagtgtgctcctcctcaag 8075143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 17108970 - 17108914
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| ||| ||||||||||||||  | | ||| ||||||||||||||||||||||    
T  17108970 cacttgggttagtttggtggtattgactggagatgtgggagtgtgctcctcctcaag 17108914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 27093417 - 27093377
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| |||| | |||||||||||||||||||||||    
T  27093417 gtggtattggcttggaacttgggagtgtgctcctcctcaag 27093377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 30311326 - 30311366
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || ||||||| ||||||||||||||||||||||    
T  30311326 gtggtataggcttgggatctgggagtgtgctcctcctcaag 30311366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 32651494 - 32651454
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  32651494 gtggtattggcttgggacctgggagtgtgctcctcctcaag 32651454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 47810816 - 47810760
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| |||||||||||| || ||  |||||||||||||||||| ||||    
T  47810816 cacttgggttggtctggtggtattggctttggtcttgggagtgtgctcctccgcaag 47810760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 568 - 604
Target Start/End: Complemental strand, 51903933 - 51903897
Alignment:
Q  568 tggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  51903933 tggtattggcttgggatctgggagtgtgctcctcctc 51903897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 27924045 - 27924103
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||| ||||| ||| |||||| |||||||||||||||||||||| |||||||||||||    
T  27924045 cattcaactttccaccaatttccaatgcataatttctatattaatcttcttaactagtg 27924103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 32004465 - 32004408
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagt 233  Q
    ||||||||||||| | |||||  |||||||||||||||||||||| ||||||||||||    
T  32004465 cattccacttttccccaattttaaatgcataatttctatattaatcttcttaactagt 32004408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 231
Target Start/End: Complemental strand, 38179887 - 38179832
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaacta 231  Q
    ||||| ||||||||  |||||||||| |||||||||||||||||| ||||||||||    
T  38179887 cattcaacttttcataaatttctaatacataatttctatattaatcttcttaacta 38179832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 55292354 - 55292405
Alignment:
Q  184 ttttcactaatttctaatgcataatttctatattaatattcttaactagtgt 235  Q
    ||||||| ||||| |||| |||||||||||||||||| ||||||||||||||    
T  55292354 ttttcaccaatttttaatacataatttctatattaatcttcttaactagtgt 55292405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 16467926 - 16467972
Alignment:
Q  192 aatttctaatgcataatttctatattaatattcttaactagtgtctt 238  Q
    |||||| |||||||||||||||||||||| |||||||||| ||||||    
T  16467926 aatttccaatgcataatttctatattaatcttcttaactattgtctt 16467972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 19238649 - 19238596
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||  |||||||||||| |||||| ||||||||||||||||||||    
T  19238649 cacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctc 19238596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 779788 - 779744
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaat 220  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||    
T  779788 cattcaacttttcaccaatttcaaatgcataatttctatattaat 779744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 31759714 - 31759674
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  31759714 gtggtattggcttgggacttgggagtgtgctcctcctcaag 31759674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 38869788 - 38869828
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  38869788 gtggtattggcttgggatctgggagtgtgctcctcctcaag 38869828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 51250594 - 51250538
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||  |||||||||||| ||||||| |||||||||||||| |||||||    
T  51250594 cacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaag 51250538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 606
Target Start/End: Complemental strand, 4911307 - 4911249
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    ||||||||| |||||| |||||||||| | |||||| || ||||||||||||| |||||    
T  4911307 actcacttgggttggtctggtggtattagcttgggacttaggagtgtgctcctactcaa 4911249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 40285627 - 40285677
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    ||||||||||||  ||||||||||| ||||| || ||||||||||||||||    
T  40285627 cacttgagttggcatggtggtattgatttggaatctgggagtgtgctcctc 40285677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 49576952 - 49576910
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||| || ||| |||||||||||||||||||||||    
T  49576952 tggtggtattggctttggacttgggagtgtgctcctcctcaag 49576910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 13015447 - 13015484
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  13015447 gtggtattggcttgggacttgggagtgtgctcctcctc 13015484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 607
Target Start/End: Complemental strand, 21775987 - 21775938
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||||||||||| |||| |||| ||  ||||||||||||||||||    
T  21775987 gttggtttggtggtattagtttaggatctgaaagtgtgctcctcctcaag 21775938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Complemental strand, 30938275 - 30938238
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||||||||| | |||||||||||||||||    
T  30938275 gtggtattggtttgggatcttggagtgtgctcctcctc 30938238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 46737299 - 46737246
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaac 229  Q
    ||||||||||||||  |||||| |||||| |||||||||||| || ||||||||    
T  46737299 cattccacttttcatcaatttccaatgcagaatttctatatttatcttcttaac 46737246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 574 - 607
Target Start/End: Original strand, 51969044 - 51969077
Alignment:
Q  574 tggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| ||||||||||||||||||||||||||    
T  51969044 tggtttgagatttgggagtgtgctcctcctcaag 51969077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 53496899 - 53496936
Alignment:
Q  569 ggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||||||  |||||||||||||||||||||    
T  53496899 ggtattggtttgggacctgggagtgtgctcctcctcaa 53496936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 4249197 - 4249237
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || ||||||||| ||||||||||||||||||||    
T  4249197 gtggtataggcttgggattttggagtgtgctcctcctcaag 4249237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 8030260 - 8030220
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  8030260 gtggtataggcttgggacttgggagtgtgctcctcctcaag 8030220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 31826629 - 31826669
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||||||| |||||||||||||||||||    
T  31826629 gtggtataggcttgggatttgcgagtgtgctcctcctcaag 31826669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 35803572 - 35803624
Alignment:
Q  181 cacttttcactaatttctaatgcataatttctatattaatattcttaactagt 233  Q
    ||||||| || |||||  |||||||||||||||||||||  ||||||||||||    
T  35803572 cactttttaccaattttcaatgcataatttctatattaaacttcttaactagt 35803624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 37109407 - 37109367
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  37109407 gtggtattggcttgggacctgggagtgtgctcctcctcaag 37109367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 52254476 - 52254424
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    ||||||||||||| || ||||||||  ||||||| || |||||||||||||||    
T  52254476 cacttgagttggtctgatggtattgacttgggatatgagagtgtgctcctcct 52254424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 37807282 - 37807232
Alignment:
Q  184 ttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  37807282 ttttcaccaatttgtaatgcataatttctatattaatcttcttaactagtg 37807232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 553 - 601
Target Start/End: Complemental strand, 15825783 - 15825735
Alignment:
Q  553 cttgagttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    ||||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  15825783 cttgagttggtctggtggtattagtttgagatttgggagtgtgctcctc 15825735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 16918634 - 16918594
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  16918634 gtggtattggtttgggatctgggagtgtgctcctcctcaag 16918594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 30838076 - 30838125
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||||||    
T  30838076 gttggtctggtgatattggtttgggatttgggaatgttctcctcctcaag 30838125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 17737680 - 17737640
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||| || |||||||||||||||||||||||    
T  17737680 gtggtattggtttgtgacttgggagtgtgctcctcctcaag 17737640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 29197448 - 29197396
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||| ||||||||||||  |||||| |||||||||||||||||||    
T  29197448 cacttgggttggcttggtggtattgacttgggacttgggagtgtgctcctcct 29197396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 29503291 - 29503331
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  29503291 gtggtattggtttgggacctgggagtgtgctcctcctcaag 29503331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 604
Target Start/End: Complemental strand, 7799093 - 7799054
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  7799093 tggtggtattggcttgggacttgggagtgtgctcctcctc 7799054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 6760891 - 6760941
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    |||||| |||||| |||| ||||||||||||||| ||||||| ||||||||    
T  6760891 cacttgggttggtctggtagtattggtttgggatctgggagtatgctcctc 6760941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 548 - 606
Target Start/End: Original strand, 12801290 - 12801348
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||||||  | |||||||| ||||||||| |||| || |||||||||||||    
T  12801290 actcacttgagttggcctagtggtattagtttgggatctgggggtatgctcctcctcaa 12801348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 23052581 - 23052539
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||| |||||| ||||||||||||| |||||||||    
T  23052581 tggtggtattggcttgggacttgggagtgtgcttctcctcaag 23052539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 568 - 606
Target Start/End: Complemental strand, 23465976 - 23465938
Alignment:
Q  568 tggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||| |||||||||||| |||||||||||||    
T  23465976 tggtattggtttaggatttgggagtatgctcctcctcaa 23465938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 37985200 - 37985142
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    |||| |||||||||| |||||  |||| ||||||||||||||||| || ||||||||||    
T  37985200 catttcacttttcaccaattttcaatgtataatttctatattaatcttattaactagtg 37985142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 1729836 - 1729873
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  1729836 gtggtattggcttgggacttgggagtgtgctcctcctc 1729873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 607
Target Start/End: Original strand, 11251098 - 11251147
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||| || |||||||||| |||||| |||| ||||||||||||||||||    
T  11251098 gttggcttagtggtattggcttgggacttggaagtgtgctcctcctcaag 11251147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 603
Target Start/End: Original strand, 18259737 - 18259786
Alignment:
Q  554 ttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||||||  |||||||||||| ||| |||||| |||||||||||||||    
T  18259737 ttgagttggcctggtggtattggcttgagatttgagagtgtgctcctcct 18259786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 19016035 - 19016088
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| || ||||||||| ||| || ||||||||||||||||||||    
T  19016035 cacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctc 19016088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Original strand, 26545844 - 26545893
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcct 600  Q
    |||||| ||||||||||||||||| | ||||||| ||| |||||||||||    
T  26545844 cacttgggttggtttggtggtattagcttgggatctggaagtgtgctcct 26545893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Complemental strand, 7667541 - 7667489
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| ||||||  |||| |||||| |||||| |||||||||||||||||||    
T  7667541 cacttgggttggtcgggtgatattggcttgggacttgggagtgtgctcctcct 7667489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 12086201 - 12086145
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||| ||||||  |||||||||||| ||||||  ||| ||||||||||||||||||    
T  12086201 cacttaagttggcctggtggtattggcttgggacctggaagtgtgctcctcctcaag 12086145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 19322788 - 19322828
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||||  |||||||||||||||| |||||    
T  19322788 gtggtattggtttgggacctgggagtgtgctcctcttcaag 19322828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 30359658 - 30359714
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| ||||| |||||||| |||| ||||||  | ||||||||||||||||||||    
T  30359658 cacttgggttggcttggtggtgttggcttgggaccttggagtgtgctcctcctcaag 30359714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 37480079 - 37480135
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||  |||||||||||| ||||||  || |||||||||||||||||||    
T  37480079 cacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaag 37480135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 42327451 - 42327411
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  42327451 gtggtattggcttgggacctgggagtgtgctcctcctcaag 42327411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 15646181 - 15646123
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||||||||||||  |||||  |||||||||||||||||||||| |||||||||||||    
T  15646181 cattccacttttcatcaattttcaatgcataatttctatattaatcttcttaactagtg 15646123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 45235451 - 45235398
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| || |||||||||||||||| ||||||||||||||||||||    
T  45235451 cacttgggttggtctgatggtattggtttgggacttgggagtgtgctcctcctc 45235398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 41508835 - 41508891
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||  |||||||| ||||||||||| ||||||||||||||||||||||    
T  41508835 cacttgggttggcctggtggtactggtttgggatctgggagtgtgctcctcctcaag 41508891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 8177251 - 8177198
Alignment:
Q  554 ttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||  | |||||||||| ||||||| ||||||||||||||||||||||    
T  8177251 ttgagttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaag 8177198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 40088072 - 40088018
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||| | ||||||| |||  |||||||||||||||||||||||||    
T  40088072 cacttgagttggtttgatagtattggcttg--atttgggagtgtgctcctcctcaag 40088018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 565 - 606
Target Start/End: Complemental strand, 52116839 - 52116798
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  52116839 tggtggtattggcttgggacttgggagtgtgctcctcctcaa 52116798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 15786392 - 15786336
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| | || ||||||| ||||||| ||||||||||||||||||||||    
T  15786392 cacttgggttggtctagtagtattggcttgggatctgggagtgtgctcctcctcaag 15786336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 31794320 - 31794280
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  31794320 gtggtattggcttgggacttgggagtgtgctcctcctcaag 31794280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 44046204 - 44046164
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  44046204 gtggtattggcttgggatctgggagtgtgctcctcctcaag 44046164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 606
Target Start/End: Original strand, 952515 - 952570
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    ||||||||||||| ||||||| |||| ||||||  ||||||||||||| |||||||    
T  952515 cacttgagttggtctggtggtgttggcttgggacctgggagtgtgctcatcctcaa 952570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 14321091 - 14321140
Alignment:
Q  182 acttttcactaatttctaatgcataatttctatattaatattcttaacta 231  Q
    ||||||||  |||||  |||||||||||||||||||||| ||||||||||    
T  14321091 acttttcatcaattttcaatgcataatttctatattaatcttcttaacta 14321140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 567 - 604
Target Start/End: Original strand, 17410251 - 17410288
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||||||||| |||||||||| ||||||||    
T  17410251 gtggtattggtttgggatctgggagtgtggtcctcctc 17410288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 600
Target Start/End: Complemental strand, 18037685 - 18037636
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcct 600  Q
    |||||| |||||| || || ||||||||||||| ||||||||||||||||    
T  18037685 cacttgggttggtctgatgatattggtttgggacttgggagtgtgctcct 18037636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 21268065 - 21268012
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||||||  | || ||||||| |||||| ||||||||||||||||||||    
T  21268065 cacttgagttgggctagtagtattggcttgggacttgggagtgtgctcctcctc 21268012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 24902307 - 24902360
Alignment:
Q  178 ttccacttttcactaatttctaatgcataatttctatattaatattcttaacta 231  Q
    ||||||||||||| | ||||||||| | ||||||||||||||| || |||||||    
T  24902307 ttccacttttcaccactttctaatgtaaaatttctatattaatcttgttaacta 24902360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 6122814 - 6122854
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  6122814 gtggtataggcttgggacttgggagtgtgctcctcctcaag 6122854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 562 - 606
Target Start/End: Complemental strand, 10150930 - 10150886
Alignment:
Q  562 gtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||||||||||  ||||||| |||||||||| |||||||||||    
T  10150930 gtttggtggtatttatttgggacttgggagtgtactcctcctcaa 10150886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 19528399 - 19528343
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||  |||||||||||| ||||||| |  |||||||||||||||||||    
T  19528399 cacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaag 19528343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 33700829 - 33700789
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| |||| || ||||||||||||||||||||||    
T  33700829 gtggtattggcttggaatctgggagtgtgctcctcctcaag 33700789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 238
Target Start/End: Complemental strand, 33776707 - 33776675
Alignment:
Q  206 aatttctatattaatattcttaactagtgtctt 238  Q
    ||||||||||||||| |||||||||||||||||    
T  33776707 aatttctatattaatcttcttaactagtgtctt 33776675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 606
Target Start/End: Original strand, 51703790 - 51703838
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    |||||| | |||||||||| |||| || |||||||||||||||||||||    
T  51703790 gttggtctagtggtattggcttggaatctgggagtgtgctcctcctcaa 51703838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 603
Target Start/End: Complemental strand, 52336830 - 52336794
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  52336830 gtggtattggcttgggatctgggagtgtgctcctcct 52336794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 13121 - 13062
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||  ||||| ||||||||||||| ||| ||| ||||||||||||||||||||||    
T  13121 actcacttcggttggcttggtggtattggcttgagatctgggagtgtgctcctcctcaag 13062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 9062916 - 9062963
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatatt 223  Q
    ||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  9062916 cattcaacttttcaccaatttccaatgcataatttctatattaatatt 9062963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 567 - 606
Target Start/End: Complemental strand, 34293872 - 34293833
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaa 606  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  34293872 gtggtattggtttggaatttgggagtgtgctcctcctcaa 34293833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 27133970 - 27133904
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtgtcttaaga 242  Q
    ||||||||||||||| |||||  |||||| |||| |||||||||| |||||||||| || |||||||    
T  27133970 cattccacttttcaccaattttcaatgcaaaattactatattaatcttcttaactaatgccttaaga 27133904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 8307959 - 8307906
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaac 229  Q
    ||||||||||||||  |||||| |||||||||||||||||||||| | ||||||    
T  8307959 cattccacttttcatcaatttccaatgcataatttctatattaatctccttaac 8307906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 33549108 - 33549161
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| |||||||||||| ||||||  |||||||||||||||||||    
T  33549108 cacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctc 33549161  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 548 - 604
Target Start/End: Complemental strand, 6776682 - 6776626
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||| |||||  |||||||||||| ||||||| |||| ||||||||||||||    
T  6776682 actcacttgggttggcctggtggtattggcttgggatctgggggtgtgctcctcctc 6776626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 28363957 - 28363997
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  28363957 gtggtattggtttgggatctgcgagtgtgctcctcctcaag 28363997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 548 - 607
Target Start/End: Complemental strand, 10338249 - 10338190
Alignment:
Q  548 actcacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||| |||||  |||||||||||| ||||||  | ||||||||||||||||||||    
T  10338249 actcacttgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaag 10338190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 604
Target Start/End: Original strand, 21418488 - 21418527
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||| |||||| ||||||||||||||||||||    
T  21418488 tggtggtattggcttgggacttgggagtgtgctcctcctc 21418527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 23898820 - 23898878
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||||||||| ||  |||||| ||| |||||||||||| ||||| |||||||||||||    
T  23898820 cattccactttccatcaatttccaatacataatttctatgttaatcttcttaactagtg 23898878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 558 - 604
Target Start/End: Complemental strand, 24641255 - 24641209
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||| ||||||||||||  ||||||| |||||||||||||||||||    
T  24641255 gttggcttggtggtattgacttgggatctgggagtgtgctcctcctc 24641209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 551 - 601
Target Start/End: Original strand, 30127404 - 30127454
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    |||||| |||||| |||||||||||| ||||| | ||||||||||||||||    
T  30127404 cacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctc 30127454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 6758494 - 6758441
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||  |||||||||||| || ||||||||||||||||||| ||||    
T  6758494 cacttgtgttggcctggtggtattggcttaggatttgggagtgtgctccacctc 6758441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 31623063 - 31623010
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| ||||||  ||||||||||| ||||||  |||||||||||||||||||    
T  31623063 cacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctc 31623010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 12188359 - 12188319
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  12188359 gtggtattggcttgggacctgggagtgtgctcctcctcaag 12188319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 566 - 607
Target Start/End: Complemental strand, 2527 - 2486
Alignment:
Q  566 ggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  2527 ggtggtattggttttggatctgggagtgtgctcctcctcaag 2486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 15395 - 15342
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| |||||||||||| ||||||  |||||||||||||||||||    
T  15395 cacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctc 15342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Original strand, 968366 - 968419
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||||||  |||||||||||| ||||||  |||||||||||||||||||    
T  968366 cacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctc 968419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 551 - 604
Target Start/End: Complemental strand, 35641973 - 35641920
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||| |||||| ||||||||| || ||| |||||||||||||||||||||||    
T  35641973 cacttgggttggtctggtggtatcggcttgagatttgggagtgtgctcctcctc 35641920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 236
Target Start/End: Original strand, 11517630 - 11517690
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtgtc 236  Q
    ||||| |||||| || |||||| |||||||||||| ||||||||| ||||||| |||||||    
T  11517630 cattctactttttaccaatttccaatgcataatttttatattaattttcttaattagtgtc 11517690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 28783064 - 28783120
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| ||||| ||||||||||||| ||| ||  ||||||||||||||||||||||    
T  28783064 cacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaag 28783120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Original strand, 36205199 - 36205255
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||| |||||| || || |||||||||| ||| ||||||||||||||||||||||    
T  36205199 cacttgggttggtctgatgttattggtttgagatctgggagtgtgctcctcctcaag 36205255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 3058114 - 3058071
Alignment:
Q  558 gttggtttggtggtattggtttgggatttgggagtgtgctcctc 601  Q
    |||||| ||||||||||||||||||  |||||||||||||||||    
T  3058114 gttggtctggtggtattggtttgggtcttgggagtgtgctcctc 3058071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 567 - 601
Target Start/End: Original strand, 7286227 - 7286261
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctc 601  Q
    |||||||||||||||||| ||||||||||||||||    
T  7286227 gtggtattggtttgggatctgggagtgtgctcctc 7286261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 554 - 604
Target Start/End: Complemental strand, 9555526 - 9555476
Alignment:
Q  554 ttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    ||||||||||  |||||| |||||||||||| | |||||||||||||||||    
T  9555526 ttgagttggtacggtggtcttggtttgggatctaggagtgtgctcctcctc 9555476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 565 - 607
Target Start/End: Complemental strand, 23361707 - 23361665
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||||  ||||||| ||||||||||||||||||||||    
T  23361707 tggtggtattgacttgggatatgggagtgtgctcctcctcaag 23361665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 567 - 605
Target Start/End: Complemental strand, 30483940 - 30483902
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctca 605  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  30483940 gtggtattggcttgggatatgggagtgtgctcctcctca 30483902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 607
Target Start/End: Complemental strand, 3305241 - 3305204
Alignment:
Q  570 gtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  3305241 gtattggtttgggatctgggagcgtgctcctcctcaag 3305204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 2203512 - 2203552
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||||||||| ||||||  ||||||||||||||||||||||    
T  2203512 gtggtattggcttgggacctgggagtgtgctcctcctcaag 2203552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 11819796 - 11819836
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  11819796 gtggtataggcttgggacttgggagtgtgctcctcctcaag 11819836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 13129688 - 13129728
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||| |||||||||||| ||||||||| |||||||||||||    
T  13129688 gtggcattggtttgggacttgggagtgcgctcctcctcaag 13129728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Original strand, 27750750 - 27750790
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||||| || |||||| |||||||||||||||||||||||    
T  27750750 gtggtataggcttgggacttgggagtgtgctcctcctcaag 27750790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 551 - 603
Target Start/End: Original strand, 29431015 - 29431067
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcct 603  Q
    |||||| |||||  ||| |||||||| |||||| |||||||||||||||||||    
T  29431015 cacttgggttggcctggcggtattggcttgggacttgggagtgtgctcctcct 29431067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 607
Target Start/End: Complemental strand, 44780170 - 44780130
Alignment:
Q  567 gtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    |||| ||||| |||||| |||||||||||||||||||||||    
T  44780170 gtggcattggcttgggacttgggagtgtgctcctcctcaag 44780130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 551 - 607
Target Start/End: Complemental strand, 15849 - 15793
Alignment:
Q  551 cacttgagttggtttggtggtattggtttgggatttgggagtgtgctcctcctcaag 607  Q
    ||||| ||||||  |||||||||||| ||||||||| ||||| ||||||||||||||    
T  15849 cacttaagttggcctggtggtattggcttgggattttggagtatgctcctcctcaag 15793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 565 - 604
Target Start/End: Original strand, 11546 - 11585
Alignment:
Q  565 tggtggtattggtttgggatttgggagtgtgctcctcctc 604  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  11546 tggtggtattggcttgggatctgggagtgtgctcctcctc 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 36294 - 36236
Alignment:
Q  176 cattccacttttcactaatttctaatgcataatttctatattaatattcttaactagtg 234  Q
    ||||||| |||||||  ||||| ||||||||||||||||| || | |||||||||||||    
T  36294 cattccatttttcaccgatttccaatgcataatttctataatagtcttcttaactagtg 36236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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