View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4980-Insertion-6 (Length: 151)
Name: NF4980-Insertion-6
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 5e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 5e-76
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 54479536 - 54479679
Alignment:
| Q |
8 |
gattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagtaaaccaca |
107 |
Q |
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| T |
54479536 |
gattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagtaaaccaca |
54479635 |
T |
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| Q |
108 |
accaaagaccaaaatatgagtaatgaaattgagtagatagcgtt |
151 |
Q |
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| T |
54479636 |
accaaagaccaaaatatgagtaatgaaattgagtagatagcgtt |
54479679 |
T |
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Target: chr5 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 1139192 - 1139085
Alignment:
| Q |
8 |
gattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagtaaaccaca |
107 |
Q |
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| T |
1139192 |
gattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtgataccgatgagtaaaccaaa |
1139093 |
T |
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| Q |
108 |
accaaaga |
115 |
Q |
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| T |
1139092 |
accaaaga |
1139085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 8 - 115
Target Start/End: Complemental strand, 1135984 - 1135877
Alignment:
| Q |
8 |
gattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagtaaaccaca |
107 |
Q |
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| T |
1135984 |
gattgaggcttaaggatggatcttggaagttttggatttgaaagttgaaagaaaaatctttaacacaaaaagtgagtgtcataccaatgagtaaaccaaa |
1135885 |
T |
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| Q |
108 |
accaaaga |
115 |
Q |
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| T |
1135884 |
actaaaga |
1135877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 4e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 31269396 - 31269527
Alignment:
| Q |
8 |
gattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagtaaaccaca |
107 |
Q |
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| T |
31269396 |
gattgaagctaaaaggtggatcttgaaattgttggaattgaaaattgaatgaaacatttttgagacaaaaagtgagagtgataccaatgagtaaaccaag |
31269495 |
T |
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| Q |
108 |
accaaagaccaaaatatgagtaatgaaattga |
139 |
Q |
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| T |
31269496 |
accaaatacaagaatatgaccaaagaaattga |
31269527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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