View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4980-Insertion-7 (Length: 375)
Name: NF4980-Insertion-7
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-7 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] scaffold1439 (1 HSPs) |
| | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 7 - 375
Target Start/End: Original strand, 34989623 - 34989991
Alignment:
| Q |
7 |
aataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataaga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989623 |
aataaggatgttgccatgtattgtaagaaatcttcatttattgaagtgcatgaactacaaccattaactgaagaacaatcaattgatttgttcaataaga |
34989722 |
T |
|
| Q |
107 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34989723 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctaggaagtgcaagggcttaccactagcaattgt |
34989822 |
T |
|
| Q |
207 |
gactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34989823 |
gactattggtggtcttttatctacaaaggggagaaatgcatttgaatggcagagatttagtgaaaatatgactgtagagctaaggaatgattcccatttg |
34989922 |
T |
|
| Q |
307 |
accagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgtta |
375 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989923 |
accagaataaaaaagattttaggtcttagctatgatgatttgcctttttatcttaaatcatgtttgtta |
34989991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 373
Target Start/End: Complemental strand, 2305545 - 2305179
Alignment:
| Q |
7 |
aataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataaga |
106 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||| ||| | |||||||||| ||||||| |
|
|
| T |
2305545 |
aatatggatgttgccatatattgtaagaaatcttcttttattcaagtgcatgaactacaacttttaactgaggaaaaataatttgatttgtttaataaga |
2305446 |
T |
|
| Q |
107 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
2305445 |
aggcatttcaatttgactttgaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaagtgcaagggcttacccctagcaattgt |
2305346 |
T |
|
| Q |
207 |
gactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttg |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2305345 |
aactattggtggtcttttatctacaaaggagaaaaatgcatttgaatggcagagatttagtgaaaatatgactttagagttaaagaatgattcccatttg |
2305246 |
T |
|
| Q |
307 |
accagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgt |
373 |
Q |
| |
|
||| | ||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
2305245 |
accgggataaaaaagattttaggttttagctatggtgatttgcctttttatcttaaatcgtgtttgt |
2305179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 34975970 - 34976145
Alignment:
| Q |
200 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
299 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34975970 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34976069 |
T |
|
| Q |
300 |
ccatttgaccagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgtta |
375 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| ||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
34976070 |
tcatttgaccgggataaaaaagattttaggttttagctatgatgatctgccttgttatcttaaatcgtgtttgtta |
34976145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 200 - 375
Target Start/End: Original strand, 34983081 - 34983256
Alignment:
| Q |
200 |
caattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattc |
299 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
34983081 |
caattgtaactattgggggtcttttatctacaaaggagaaaaatgtatttgaatgacagagatttagtgaaaatatgacttttgagctaaagaatgattc |
34983180 |
T |
|
| Q |
300 |
ccatttgaccagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgtta |
375 |
Q |
| |
|
||||||||| | ||||||||||||||||| |||||||| ||||| |||||| |||||||||||| ||||||||| |
|
|
| T |
34983181 |
tcatttgaccgggataaaaaagattttaggttttagctatgatgatctgccttgttatcttaaatcgtgtttgtta |
34983256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 22)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 7 - 374
Target Start/End: Complemental strand, 22657126 - 22656759
Alignment:
| Q |
7 |
aataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataaga |
106 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||| |||| ||||| ||||||| |
|
|
| T |
22657126 |
aatatggatgttgcggtgtattgtaagaaatcttcttttattgaagtgcatgaactacatcctttaacagtagaacaatcttttgagttgtttaataaga |
22657027 |
T |
|
| Q |
107 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
|||| |||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| || ||||| || |||||||| |
|
|
| T |
22657026 |
aggcctttcaatttgactttaatggatgttgtccaaaagagctcattgatatatcttccgaaattgctagaaaatgcaaaggtttaccgctggcaattgt |
22656927 |
T |
|
| Q |
207 |
gactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttg |
306 |
Q |
| |
|
| ||||||| || ||||||||||||||||||| |||||||||||||||||| |||| || ||||||||| ||||||||| ||| |||||||||||||| |
|
|
| T |
22656926 |
ggctattggcggccttttatctacaaaggagaaaaatgcatttgaatggcaaagatttaatgaaaatataactttagagttaaataatgattcccattta |
22656827 |
T |
|
| Q |
307 |
accagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgtttgtt |
374 |
Q |
| |
|
||| | ||||||| || | ||| | ||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
22656826 |
accgggataaaaaaaatacttggtttcagctacgatgatttgcctttttatcttaagtcatgtttgtt |
22656759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 22620969 - 22620700
Alignment:
| Q |
12 |
ggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggca |
111 |
Q |
| |
|
||||||||| || |||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||| | |
|
|
| T |
22620969 |
ggatgttgctatttattgtaaaaaatcttcttttattgaggtgcatgaactacaacctttaactgaggaacaatcttttgagttgttcaataagaaggta |
22620870 |
T |
|
| Q |
112 |
tttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgacta |
211 |
Q |
| |
|
|||| ||||||||| || ||| ||||||||||||| || ||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| | |
|
|
| T |
22620869 |
tttcgatttgactttgatggaagttgtccaaaagatctaattgatatatcttccgaaattgctagaaaatgcaagggtttaccactagcaattgtagccg |
22620770 |
T |
|
| Q |
212 |
ttggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgacttt |
281 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |||| ||||| || ||||||||||||||| |
|
|
| T |
22620769 |
ttggtggtcttttatctacaaagttgaaaaatgcatttgattggcggagatttaatgaaaatatgacttt |
22620700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 7 - 371
Target Start/End: Complemental strand, 22648244 - 22647880
Alignment:
| Q |
7 |
aataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataaga |
106 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| || ||||||||| ||||| | ||||||||||| | |||||||| |||| |||||||| |||| |
|
|
| T |
22648244 |
aatatggatgttgccatatattgtaagaaatcttctttcattgaagtgtatgaattgcaacctttaacaaatgaacaatcttttgagttgttcaacaaga |
22648145 |
T |
|
| Q |
107 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
|| ||||||| |||||| | ||||||||||||||||| |||||||||||| ||||||||||| ||||||| |||||||| ||||| || |||||||| |
|
|
| T |
22648144 |
agacatttcagtttgacaacaatggatgttgtccaaaagaactcattgatatatcttttgaaatttctagaaaatgcaagggtttaccgctggcaattgt |
22648045 |
T |
|
| Q |
207 |
gactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaaggaatgattcccatttg |
306 |
Q |
| |
|
| ||||||||||| || |||||||| |||| ||||| |||||| ||||||| || | || ||||||||||||||||||||| ||| ||||| | |||| |
|
|
| T |
22648044 |
tgccattggtggtctattgtctacaaaagagaaaaatgtatttgagtggcagaaattttgtaaaaatatgactttagagctaaagaaagattctcttttg |
22647945 |
T |
|
| Q |
307 |
accagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaatcatgttt |
371 |
Q |
| |
|
|| | ||| || |||||||| | ||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
22647944 |
gccgggataagcaaaattttaggattcagctacaatgatttgcctttctatcttaaaccatgttt |
22647880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 22034943 - 22035205
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||| |||||||| || ||||| |||| ||| || |||||||||||| ||||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
22034943 |
ttgtaaaaaatcttctttcattgaggtgcttgagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgactac |
22035042 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
| ||| | |||||| ||||||||||||| ||||||| |||||||| || |||||| ||||| || |||||||||||||| |||||||||| ||||||| |
|
|
| T |
22035043 |
ggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaagtgaaagggtttgccactagcaattgttgctattggtggacttttat |
22035142 |
T |
|
| Q |
227 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||||||| ||| |||||| | | ||||||||||| |
|
|
| T |
22035143 |
ctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaatttaaatttagagctaa |
22035205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 22115511 - 22115757
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||| |||||||| || ||||| |||| | | || |||||||||||| ||||||||||| | | |||||||||||||||||||| ||||||||| |
|
|
| T |
22115511 |
ttgtaaaaaatcttctttcattgaggtgctttagctgcaacctttaactcaagaacaatcattgaagttgttcaataagaaggcattcaaatttgactac |
22115610 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
| ||| | |||||| ||||||||||||| ||||||| |||||||| || ||| |||||||| ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
22115611 |
ggagggtcttgtcccaaagagctcattggtatagctaatgaaattgttaaaaaatgcaagggtttaccgctagcaattgttgccatcggtggacttttat |
22115710 |
T |
|
| Q |
227 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaat |
273 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||||||| ||| |||||| |
|
|
| T |
22115711 |
ctacaagagagaaaaatgtgtttgagtggcagagatttagagaaaat |
22115757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 22615308 - 22615110
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||||| ||||||||| | |||||||||| | ||||||||||||||||||||||| | || ||||| |||||||||||||||||||||||| |
|
|
| T |
22615308 |
ttgtaagagatcttcgttagtcaaagtgcatgagttgcaacctttaactgaagaacaatctctggagttgtttaataagaaggcatttcaatttgac--- |
22615212 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||| ||| |||| || ||| ||||| || ||||||||||||||||| | || || |||||||||| |
|
|
| T |
22615211 |
aaatgttgttgtccaaaagagctcattgatatatcttatgatattgttaaaaaatgcaaaggtttaccactagcaattgttgccatcggaggtcttttat |
22615112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 22187424 - 22187676
Alignment:
| Q |
37 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
136 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| || ||||||||| | || |||||||||||||||||||| || |||| | || || |||| |
|
|
| T |
22187424 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaaggcattcaaaattgattgtgatgggtgtt |
22187523 |
T |
|
| Q |
137 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
236 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||| || ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
22187524 |
gtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagaga |
22187623 |
T |
|
| Q |
237 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
|| ||||| ||||| |||||||||| ||| ||| || ||| || |||||||| |
|
|
| T |
22187624 |
gaaaaatgtgtttgagtggcagagatttagagaacatctgaattcagagctaa |
22187676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 27 - 289
Target Start/End: Original strand, 21930847 - 21931109
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||| |||||||| || |||||| ||| ||| | |||||||||||| | |||||||| | || |||||||||||||||||||| ||||||||| |
|
|
| T |
21930847 |
ttgtaaaaaatcttctttcattgaaatgcttgagttgcaacctttaactcatgaacaatctttggagttgttcaataagaaggcattcaaatttgactat |
21930946 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
|| || |||||||||| ||||||||||| || | || |||||||| || ||| ||||| || ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
21930947 |
gatgggtgttgtccaacagagctcattggtacaactaatgaaattgttaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggacttttat |
21931046 |
T |
|
| Q |
227 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
|||||| |||| ||||| ||||| |||||| ||| ||| |||||| | | ||||||||||| |
|
|
| T |
21931047 |
ctacaagagagaaaaatgtgtttgagtggcagcgatttagagaaaatctaaatttagagctaa |
21931109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 289
Target Start/End: Complemental strand, 30989345 - 30989083
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||| |||||||| | ||||||||||| ||| | |||||||||| |||| ||||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
30989345 |
ttgtaaaaaatcttcttatattgaagtgcttgagttgcaacctttaaatgaacaacaatctttggagttgttcaataagaaggcattcagatttgaccat |
30989246 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
| || ||||||||||| |||||||||| |||||||| |||||||| || ||| || || || ||||| ||||||||||| | ||||| || ||||| | |
|
|
| T |
30989245 |
ggtggttgttgtccaaaggagctcattggtatagcttatgaaattgttaaaaaatgtaacggtttaccgctagcaattgttgccattggaggacttttgt |
30989146 |
T |
|
| Q |
227 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
|| |||| |||| ||||| ||||| ||||| |||| |||||| ||| | | ||||||||||| |
|
|
| T |
30989145 |
ctgcaaaagagaaaaatgtgtttgagtggcaaagatttagtgagaatctaagtttagagctaa |
30989083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 289
Target Start/End: Original strand, 22028436 - 22028688
Alignment:
| Q |
37 |
tcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgtt |
136 |
Q |
| |
|
||||| |||||||| ||||||||||| ||||||||| || ||||||||| | || |||||||||||||| |||| || |||| | || || |||| |
|
|
| T |
22028436 |
tcttcttttattgaggtgcatgaactgcaacctttatctctagaacaatctttggagttgttcaataagaattcattcaaaattgattgtgatgggtgtt |
22028535 |
T |
|
| Q |
137 |
gtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaagga |
236 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||| || ||| |||| || ||||| ||||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
22028536 |
gtccaaacgagctcattggtatagctgatgaaattgttaaaaaatgcagtggtttaccgctagcaattgttgccatcggtggccttttatctacaagaga |
22028635 |
T |
|
| Q |
237 |
gagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
|| ||||| ||||| ||||||| || ||| ||| || ||| || |||||||| |
|
|
| T |
22028636 |
gaaaaatgtgtttgagtggcagatatttagagaacatctgaattcagagctaa |
22028688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 369
Target Start/End: Complemental strand, 22628338 - 22628233
Alignment:
| Q |
264 |
tagtgaaaatatgactttagagctaaggaatgattcccatttgaccagagtaaaaaagattttaggtcttagctatcatgatttgcctttttatcttaaa |
363 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| | |||| ||| |||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
22628338 |
tagtgaaaatatgactttagagctaaacaaggattcccatttgactcgggtaagaaaagttttaggttttagctacaatgatatgcctttttatcttaaa |
22628239 |
T |
|
| Q |
364 |
tcatgt |
369 |
Q |
| |
|
|||||| |
|
|
| T |
22628238 |
tcatgt |
22628233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 273
Target Start/End: Original strand, 21937579 - 21937825
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
|||||| |||||||| || |||||||| | ||| | ||| ||||||| | |||||||| | || |||||||||||||||||||| ||||||||| |
|
|
| T |
21937579 |
ttgtaaaaaatcttctttcattgaagttcttgagttgcaatgtttaactcatgaacaatctttggagttgttcaataagaaggcattcaaatttgactat |
21937678 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttat |
226 |
Q |
| |
|
|| || ||||||||||||||||| | || |||| || |||||||| | ||| ||||| || ||||| ||||||||||| | || ||||| ||||||| |
|
|
| T |
21937679 |
gatgggtgttgtccaaaagagctaaatggtatatctaatgaaattgtaaaaaaatgcaatggtttaccgctagcaattgttgccatcggtggccttttat |
21937778 |
T |
|
| Q |
227 |
ctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaat |
273 |
Q |
| |
|
|||||| |||| ||||| ||||| ||| |||||| ||| |||||| |
|
|
| T |
21937779 |
ctacaagagagaaaaatgtgtttgagtggaagagatttagagaaaat |
21937825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 22358042 - 22357866
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttg |
126 |
Q |
| |
|
||||||||||||||| ||| |||||||| |||||||| || ||| |||| ||||||||| |||| |||||||||||||||||||| || |||||| |
|
|
| T |
22358042 |
ttgtaagaaatcttcttttgttgaagtgtatgaactaaaaggtttgactgtagaacaatcttttgagttgttcaataagaaggcattcca---tgactta |
22357946 |
T |
|
| Q |
127 |
gaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
| ||| |||||||| || | || ||||||||| ||| |||||| || ||| ||||| || ||||||||||||||||| |
|
|
| T |
22357945 |
aatggacgttgtccagaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattaccactagcaattgt |
22357866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 289
Target Start/End: Original strand, 22105205 - 22105396
Alignment:
| Q |
98 |
tcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccact |
197 |
Q |
| |
|
|||||||||||| ||| ||||||| | || || |||||||||||||||||||||| ||||||| ||| |||| || ||| ||||| || ||||| || |
|
|
| T |
22105205 |
tcaataagaaggtattcaaatttgattgtgatgggtgttgtccaaaagagctcattggtatagctaatgacattgttaaaaaatgcaatggtttaccgct |
22105304 |
T |
|
| Q |
198 |
agcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactttagagctaa |
289 |
Q |
| |
|
||||||||| | || ||||| ||||||||||||| |||| | || ||||| |||||||||| ||| ||| || ||| || |||||||| |
|
|
| T |
22105305 |
agcaattgttgccataggtggccttttatctacaatagagaatagtgtgtttgagtggcagagatttagagaacatctgaattcagagctaa |
22105396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 22179910 - 22180048
Alignment:
| Q |
94 |
ttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttac |
193 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || |||| || ||||||| |||||| ||||||| |||||||| || ||| ||||| || |||| |
|
|
| T |
22179910 |
ttgttcaataagaaggcattcaaatttgacaatgacgggtgttttcaaaaagaggtcattggtatagctaatgaaattgttaaaaaatgcaatggtttac |
22180009 |
T |
|
| Q |
194 |
cactagcaattgtgactattggtggtcttttatctacaa |
232 |
Q |
| |
|
| ||||||||||| | || ||||| ||||||||||||| |
|
|
| T |
22180010 |
cgctagcaattgttgccatcggtggacttttatctacaa |
22180048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 22436671 - 22436476
Alignment:
| Q |
30 |
taagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaa |
129 |
Q |
| |
|
||||| |||||| ||| ||||||| |||||||| ||| ||||||||||||| |||| | || |||||||||||||||||||| || | ||||| |
|
|
| T |
22436671 |
taagagatcttcttttgttgaagtacatgaacttcaaggtttaactgaagaaaaatctttagaattgttcaataagaaggcattcca---taacttgagt |
22436575 |
T |
|
| Q |
130 |
ggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatct |
228 |
Q |
| |
|
|||||||||||| || | || ||||||||| ||| |||||| || ||| ||||| || ||||| ||||||||||| | |||||||||||||||| |
|
|
| T |
22436574 |
ggatgttgtccacaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatct |
22436476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 289
Target Start/End: Original strand, 21946092 - 21946312
Alignment:
| Q |
69 |
tttaactgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaa |
168 |
Q |
| |
|
||||||| |||||||||| | || ||||| ||||||||||||||| ||||||||| | || |||| |||||| ||||| |||| ||||||| |||| |
|
|
| T |
21946092 |
tttaactcaagaacaatctttggagttgtttaataagaaggcatttaaatttgactatggtgggtgttatccaaatgagctaattggtatagctaatgaa |
21946191 |
T |
|
| Q |
169 |
attgctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtg |
268 |
Q |
| |
|
|||| | ||| || || || ||||| ||||||||| |||| ||||| ||||||||||| | |||| |||| | ||| |||||||||| ||| | |
|
|
| T |
21946192 |
attgtaaaaaaatggaatggtttaccgttagcaattgctgctatcggtggccttttatctacgagagagaaaaatttgtctgagtggcagagatttagag |
21946291 |
T |
|
| Q |
269 |
aaaatatgactttagagctaa |
289 |
Q |
| |
|
||||| | | ||||||||||| |
|
|
| T |
21946292 |
aaaatctaaatttagagctaa |
21946312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 22431213 - 22431133
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaa |
107 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||| || |||||| |||||| |||| | || |||||||||||||| |
|
|
| T |
22431213 |
ttgtaagaaatcttcttttgttgaagtgcatgaacttaaaggtttaaccgaagaaaaatctttagaattgttcaataagaa |
22431133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 22367967 - 22367884
Alignment:
| Q |
27 |
ttgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggc |
110 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||| || ||||| ||||||| |||| | || ||||||||||||||||| |
|
|
| T |
22367967 |
ttgtaagaaatcttcttttgttgaagtgcataaacttgaaggtttaagtgaagaaaaatctttagaattgttcaataagaaggc |
22367884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 22208618 - 22208655
Alignment:
| Q |
193 |
ccactagcaattgtgactattggtggtcttttatctac |
230 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
22208618 |
ccacttgcaattgtggctattggtggtcttttatctac |
22208655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 18966990 - 18966946
Alignment:
| Q |
64 |
caacctttaactgaagaacaatcaattgatttgttcaataagaag |
108 |
Q |
| |
|
||||||||||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
18966990 |
caacctttaaccgaagaacaatctatagagttgttcaataagaag |
18966946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 255
Target Start/End: Complemental strand, 22442739 - 22442560
Alignment:
| Q |
73 |
actgaagaacaatcaattgatttgttcaataagaaggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattg |
172 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||| |||||| | ||| ||||||||||| | || |||| |||| ||| |||||| |
|
|
| T |
22442739 |
actgtagaacaatctttggagttgttcaataagaaggcatttca---tgacttaaacggacgttgtccaaaaaatcttattggtatatcttccaaaattg |
22442643 |
T |
|
| Q |
173 |
ctagaaagtgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatgg |
255 |
Q |
| |
|
| ||| ||||| || ||||||||||||||||| ||||||||| ||||| || | || || |||||| || |||||||| |
|
|
| T |
22442642 |
ttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaatacaattgaatgg |
22442560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1439 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold1439
Description:
Target: scaffold1439; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 7 - 206
Target Start/End: Complemental strand, 1653 - 1454
Alignment:
| Q |
7 |
aataaggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataaga |
106 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |
|
|
| T |
1653 |
aatatggatgttgctgtgtattgtaagaaatcttcttttattgaagtgcatgaactacaacctttaactgaagaaaaatcatttgatttgtttaataaga |
1554 |
T |
|
| Q |
107 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatagcttttgaaattgctagaaagtgcaagggcttaccactagcaattgt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
1553 |
aggcatttcaatttgacttggaaggatgttgtccaaaagagctcattgatatatcttttgaaatcgctaggaagtgcaagggcttacccctagcaattgt |
1454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 181 - 375
Target Start/End: Original strand, 40580513 - 40580708
Alignment:
| Q |
181 |
tgcaagggcttaccactagcaattgtgactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatgtagtgaaaatatgactt |
280 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40580513 |
tgcaagggcttaccactagcaattgttactattggtggtcttttatctacaaaggagagaaatgcatttgaatggcagagatttagtgaaaatatgactt |
40580612 |
T |
|
| Q |
281 |
tagagctaaggaatgattcccatttgaccagagtaaaaaagattttaggtcttagctatcatgatttgc-ctttttatcttaaatcatgtttgtta |
375 |
Q |
| |
|
|||||||||||||||||||| |||||| | | |||||||||||||||| ||||||| || |||||| ||||||||||||||| ||||||||| |
|
|
| T |
40580613 |
tagagctaaggaatgattccgatttgatcgggataaaaaagattttaggatttagctacgataatttgctttttttatcttaaatcctgtttgtta |
40580708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 40580399 - 40580512
Alignment:
| Q |
12 |
ggatgttgccatgtattgtaagaaatcttcgtttattgaagtgcatgaactacaacctttaactgaagaacaatcaattgatttgttcaataagaaggca |
111 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
40580399 |
ggatgttgcagtgtattgtaagaaattttcttttattgaagtgcatgaactacaacctttaacagaagaaaaatcatttgatttgttcaacaagaaggca |
40580498 |
T |
|
| Q |
112 |
tttcaatttgactt |
125 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40580499 |
tttcaatttgactt |
40580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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