View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4980-Insertion-8 (Length: 196)
Name: NF4980-Insertion-8
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980-Insertion-8 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 2599210 - 2599400
Alignment:
| Q |
6 |
cactaacatgctccaccaccttaagcatagccaacttctggatatttactaggatgttcctacttacaaggatatcatctgaaccaaatagacttctatg |
105 |
Q |
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| T |
2599210 |
cactaacatgctccaccaccttaagcatagccaacttctggatatttactaggatgttcctacttacaaggatatcatctgaactgaatagacttctatg |
2599309 |
T |
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| Q |
106 |
tctatcatgggtttggttacaataaaaaacattcatatatgcattgactcgtccctactaacagggaagtctcttaaaacagattggtctc |
196 |
Q |
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| T |
2599310 |
tctatcacgggtttggttacaataaaaaacattcatatatgcattgactcgtccctactaacagggaagtctcttaaatcagattggtctc |
2599400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 2605930 - 2606096
Alignment:
| Q |
31 |
catagccaacttctggatatttactaggatgttcctacttacaaggatatcatctgaaccaaatagacttctatgtctatcatgggtttggttacaataa |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| |
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| T |
2605930 |
catagccaacttctggatatttactaggatgttcctacttacaaggatatcatctgaaccgaatagacttctatgtctatcacgggtttggttacattaa |
2606029 |
T |
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| Q |
131 |
-aaaacattcatatatgcattgactcgtccctactaacagggaagtctcttaaaacagattggtctc |
196 |
Q |
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| T |
2606030 |
tcaaacattcatataggcattgactcatccctactaagagggaagtcacttaaatcagattggtctc |
2606096 |
T |
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