View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4980_high_5 (Length: 335)
Name: NF4980_high_5
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 50764784 - 50765108
Alignment:
| Q |
1 |
tataaaccaatagatcaaagggataacacattaatcaatcaaaaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcattataag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764784 |
tataaaccaatagatcaaagggataacacattaatcaatcaagaaggcatttatactgtcgtatataacaacctgtaagcttccataagggcattataag |
50764883 |
T |
|
| Q |
101 |
catatacatcaggttcaagtcctgcttcttgcatctgctcaaatatttcttctgctttcccacataatccctctcttgcaaatgcattcactagagcagt |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
50764884 |
catatacatcaggttcaagtccagcttcttgcatctgctcaaatatttcttctgctttctcacataatccctctcttgcaaatgcattcactagagcagt |
50764983 |
T |
|
| Q |
201 |
atatgtgcaaatattaggtttgcacttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatttcaa |
300 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50764984 |
atatgtgcaaatattaggtttgcatttttggcttaacatttcatcgaacacttttaaggccatgtaggatttaccggcctgcataaaattcaaatttcaa |
50765083 |
T |
|
| Q |
301 |
ttccattaacataattgtgtctgtg |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
50765084 |
ttccattaacataattgtgtctgtg |
50765108 |
T |
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