View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4980_high_6 (Length: 333)
Name: NF4980_high_6
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980_high_6 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4401 - 4089
Alignment:
| Q |
1 |
aaaatgtctataccataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttgatcataatctaagttaaagc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4401 |
aaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttgatcataatctaagttaaagc |
4302 |
T |
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| Q |
101 |
tatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggac--ggtgtattcttcctctgaaggagatgcca |
198 |
Q |
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| T |
4301 |
tatatttggcttcatgcaggaccagctagacgagcattgagcactgatattccatataggttgacagacggggtgtattcttcctctgaaggagatgtca |
4202 |
T |
|
| Q |
199 |
ttttagacttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4201 |
--------ttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagggat |
4110 |
T |
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| Q |
299 |
ggtctttttgttgttggtttc |
319 |
Q |
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||||||||||||||||||||| |
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| T |
4109 |
ggtctttttgttgttggtttc |
4089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 3896747 - 3896424
Alignment:
| Q |
1 |
aaaatgtctataccataatcatcacgtcaaagcattttgattaataatcattggtctctttataatattatcccaagttgatcataatctaagttaaagc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3896747 |
aaaatgtctatacaataatcatcacgtcaaagcattttgattaataatcattgatctctttataatattatccaaagttgatcataatctaagttaaagc |
3896648 |
T |
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| Q |
101 |
tatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggac--ggtgtattcttcctctgaaggaga--tgc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
3896647 |
tatatttggcttcttgcaggaccagctagacgagcattgagcactgatattccatataggttgacggacggggtgtattcttcctctgaaggagatgtgc |
3896548 |
T |
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| Q |
197 |
cattttagac-ttttagtcattccatataagtgttaattaagaatcaccctcattaggtccatcttgcttttgattttagtcattagctaggaggacagg |
295 |
Q |
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| T |
3896547 |
tatgaatgtcattttagtcattccatataagtattatttaagaatcaccctcattaggtccattttgcttttgattttagtcattagctaggaggacagg |
3896448 |
T |
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| Q |
296 |
gatggtctttttgttgttggtttc |
319 |
Q |
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| T |
3896447 |
gatggtctttttgttgttggtttc |
3896424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 140
Target Start/End: Original strand, 46285233 - 46285347
Alignment:
| Q |
26 |
gtcaaagcattttgattaataatcattggtctcttta--taatattatcccaagttgatcataatctaagttaaagctatatttggcttcttgcaggacc |
123 |
Q |
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||||||||||||| |||||||||||||||||||| | ||||||| |||| ||||||||||||| |||||| ||||||||||| |||| |||||||| |
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| T |
46285233 |
gtcaaagcattttaattaataatcattggtctctcttcctaatattgctccaaattgatcataatctgagttaa-gctatatttggattct-gcaggacc |
46285330 |
T |
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| Q |
124 |
agctagacgagcattga |
140 |
Q |
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||||||| |||| |||| |
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| T |
46285331 |
agctagatgagccttga |
46285347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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