View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4980_high_7 (Length: 314)

Name: NF4980_high_7
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4980_high_7
NF4980_high_7
[»] chr1 (4 HSPs)
chr1 (9-314)||(34989323-34989628)
chr1 (9-293)||(34975488-34975772)
chr1 (9-292)||(34980268-34980551)
chr1 (14-312)||(2305542-2305840)
[»] chr3 (20 HSPs)
chr3 (9-312)||(22657123-22657426)
chr3 (9-301)||(22620982-22621274)
chr3 (9-219)||(22648309-22648518)
chr3 (186-298)||(22615339-22615451)
chr3 (22-124)||(22187107-22187209)
chr3 (22-123)||(22028119-22028220)
chr3 (24-123)||(22179538-22179637)
chr3 (188-298)||(21930706-21930816)
chr3 (24-69)||(22615559-22615604)
chr3 (22-98)||(22034636-22034712)
chr3 (186-298)||(22115368-22115480)
chr3 (24-67)||(22115206-22115249)
chr3 (241-312)||(22648241-22648312)
chr3 (26-123)||(22458735-22458832)
chr3 (26-123)||(22481716-22481813)
chr3 (24-67)||(21937274-21937317)
chr3 (239-298)||(30989376-30989435)
chr3 (24-67)||(30989607-30989650)
chr3 (213-295)||(22431247-22431329)
chr3 (9-58)||(22208126-22208175)
[»] scaffold1439 (2 HSPs)
scaffold1439 (198-292)||(1714-1808)
scaffold1439 (276-312)||(1650-1686)
[»] chr5 (2 HSPs)
chr5 (219-302)||(40580244-40580327)
chr5 (248-302)||(40580333-40580387)
[»] chr4 (1 HSPs)
chr4 (38-124)||(29610815-29610902)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 34989323 - 34989628
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  34989323 agcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcaaacaacactgaagtattgtcgagacacatgttggagaagcttt 34989422  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  34989423 acggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgt 34989522  T
Q  209 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  34989523 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagatatttattaccacaaga 34989622  T
Q  309 aataag 314  Q
    ||||||    
T  34989623 aataag 34989628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 34975488 - 34975772
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  34975488 agcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcacacaacactgaagtattgtcgagacacatgttggagaagcttt 34975587  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  34975588 acggacaaaaaggagaaaaacctcctaaaggaatcactgaaatggatcgaggtgcattgatttctgagttgagaaagtacttgcagaaaaagaggtatgt 34975687  T
Q  209 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagata 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  34975688 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagata 34975772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 292
Target Start/End: Original strand, 34980268 - 34980551
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||| |||||||||    
T  34980268 agcaaagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagcttt 34980367  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    ||||||||||||||||| | |||| | |||  ||||||||||||||| ||| ||||||||||| |||||||| ||| ||||||||||||||||||||| |    
T  34980368 acgaacaaaaaggagaacatcctcttgaagatatcactgaaatggatcgagatgcattgatttatgagttgagaaattacttgcagaaaaagaggtatgt 34980467  T
Q  209 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  34980468 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 34980551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 2305840 - 2305542
Alignment:
Q  14 agaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaa 113  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |  ||||| ||| |||||  ||||||| |||||||| |||||    
T  2305840 agaggttgtgggacactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaagtcttgttgagatgcatgttgaagaagcttcacgaa 2305741  T
Q  114 caaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatatttttg 213  Q
    ||||||| ||||   |  | |||||  |||  |||||||||| |||||| |||||||| |||||||| ||||||||||||||| ||||||||| ||||||    
T  2305740 caaaaagtagaatttctacctaaagatatctatgaaatggatcgaggtgaattgatttttgagttgagaaagtacttgcagaataagaggtatgtttttg 2305641  T
Q  214 tgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 312  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||||    
T  2305640 tgtttgataatgtatggaacacaagtttttgggatgagattgaatatgctatgagtgatcataaaaatggtagtaagatatttattaccacaagaaata 2305542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 22657426 - 22657123
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |  ||||| ||| |||||| ||||||| || ||||||    
T  22657426 agcaaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcacaatcttacaatatagaagtgttgttgagacgcatgttgaaggagcttt 22657327  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    || ||||||||||||| || |||| | |||  ||||||||||||||| |||| ||||||||||||||| ||| ||| ||||||||||||||||||||| |    
T  22657326 acaaacaaaaaggagacaatcctcctcaagatatcactgaaatggatcgaggcgcattgatttctgagctgagaaaatacttgcagaaaaagaggtatgt 22657227  T
Q  209 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaaga 308  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||  ||||| |||||||||| ||||||||||||||||| | ||||    
T  22657226 ttttgtgtttgatgatgtatggaacaaaagtttttgggatgagattgaatatgctgttggtgatcataaaaatgggagtaagatatttattacaacaaga 22657127  T
Q  309 aata 312  Q
    ||||    
T  22657126 aata 22657123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 22621274 - 22620982
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| ||||||  |||||||||| |||| |||||||||| |||||||||||||||||||| | |  || |  ||||||||| |||||||| || || |||    
T  22621274 agcaaagaggtcatgggacacttcgaatatcgtgtatgggtcacagtgtcacaatcatacgatatagaggggttgctgagatacatgttgaaggagattt 22621175  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    || |||||||||||||  | |||  | |||  ||| |||||||||||  |||  ||||||||||| |||||| |||  |||||||  ||||||||||| |    
T  22621174 accaacaaaaaggagacgacccttctcaagatatctctgaaatggatctagggtcattgatttctaagttgagaaaccacttgcaacaaaagaggtatgt 22621075  T
Q  209 ttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattac 301  Q
    |||||| |||||||||||||||| || |  ||||||| |||| || ||  ||| ||||| |||| |||||||||| ||||||||||| |||||    
T  22621074 ttttgtatttgatgatgtatggaccatagatttttggaatgaaatagagcatgttgtgattgataataaaaatgggagtaagatattgattac 22620982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 219
Target Start/End: Complemental strand, 22648518 - 22648309
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagcttt 108  Q
    |||| |||||| | |||||||||||||| |||||||||||||| |||||  ||||||||| | || ||||  |||||||||  ||||||| |  ||||||    
T  22648518 agcaaagaggtagcgggacactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagcttt 22648419  T
Q  109 acgaacaaaaaggagaaaaacctcataaaggaatcactgaaatggattgaggtgcattgatttctgagttgataaagtacttgcagaaaaagaggtatat 208  Q
    || |||||||||||||| | |||| |||||| ||| |  ||||||| |||||  | |||||||||||| ||| ||| ||||||||  ||||||||||| |    
T  22648418 acaaacaaaaaggagaagagcctcctaaaggtatctcgaaaatgga-tgagggtcgttgatttctgagctgagaaactacttgcaacaaaagaggtatgt 22648320  T
Q  209 ttttgtgtttg 219  Q
    ||| |||||||    
T  22648319 tttcgtgtttg 22648309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 22615451 - 22615339
Alignment:
Q  186 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 285  Q
    ||||||||| ||||||||||  || ||||||||||||||||||||||||    ||||||| |||||||||||| || ||| | |||| |||||||||| |    
T  22615451 tacttgcagcaaaagaggtacgttgttgtgtttgatgatgtatggaacatgcatttttggaatgagattgaatctgctgtaattgataataaaaatggaa 22615352  T
Q  286 gtaagatatttat 298  Q
    |||||||||||||    
T  22615351 gtaagatatttat 22615339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 22187107 - 22187209
Alignment:
Q  22 tgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaagg 121  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| ||  |||||| |||| ||||| ||||||||   ||| ||| | ||||||||||    
T  22187107 tgggacactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaagg 22187206  T
Q  122 aga 124  Q
    |||    
T  22187207 aga 22187209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 22028119 - 22028220
Alignment:
Q  22 tgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaagg 121  Q
    ||||||||||||| |||||||||||||| |||||||| |||||||| ||  |||||| |||| ||||| ||||||||   ||| ||| | ||||||||||    
T  22028119 tgggacactttgattgtcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaagg 22028218  T
Q  122 ag 123  Q
    ||    
T  22028219 ag 22028220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 123
Target Start/End: Original strand, 22179538 - 22179637
Alignment:
Q  24 ggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggag 123  Q
    ||||||||||| |||||||||||||| |||||||| |||||||| ||  |||||| |||| ||||| ||||||||   ||| ||| | ||||||||||||    
T  22179538 ggacactttgattgtcgtgtatggattacagtgtctcaatcatataatgctgaaggattgttgagagacatgttgctaaagatttgcaaacaaaaaggag 22179637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 298
Target Start/End: Original strand, 21930706 - 21930816
Alignment:
Q  188 cttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagt 287  Q
    ||||||||||||||||||| || | |||||||||||||| |||||   |  |||||||||||| ||||||| || ||  | ||||  ||||||||| |||    
T  21930706 cttgcagaaaaagaggtatgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaatttgctgcaattgatagtaaaaatggaagt 21930805  T
Q  288 aagatatttat 298  Q
    |||||||||||    
T  21930806 aagatatttat 21930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 22615604 - 22615559
Alignment:
Q  24 ggacactttgaatgtcgtgtatggatcacagtgtcacaatcataca 69  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  22615604 ggacactttgattgtcgtgtatggatcacagtgtctcaatcataca 22615559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 22034636 - 22034712
Alignment:
Q  22 tgggacactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttg 98  Q
    ||||||||||||| | |||||||||||| |||||||| |||||||| ||  |||||| |||| ||||| ||||||||    
T  22034636 tgggacactttgattatcgtgtatggattacagtgtctcaatcatataattctgaaggattgttgagagacatgttg 22034712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 22115368 - 22115480
Alignment:
Q  186 tacttgcagaaaaagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggta 285  Q
    ||||||||||||||||||||  || | |||||||||||||| |||||   |  |||||||||||| ||||||| |  ||| | ||||  ||||||||| |    
T  22115368 tacttgcagaaaaagaggtacgttgtcgtgtttgatgatgtttggaatgtacatttttgggatgatattgaattttctgtaattgatagtaaaaatggaa 22115467  T
Q  286 gtaagatatttat 298  Q
    |||||||||||||    
T  22115468 gtaagatatttat 22115480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 22115206 - 22115249
Alignment:
Q  24 ggacactttgaatgtcgtgtatggatcacagtgtcacaatcata 67  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||    
T  22115206 ggacactttgattgtcgtgtatggatcacagtgtctcaatcata 22115249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 312
Target Start/End: Complemental strand, 22648312 - 22648241
Alignment:
Q  241 tttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattaccagaagaaata 312  Q
    ||||||||||||||||| |||   ||| |||| |||||||||| ||||||||||||||||| | ||||||||    
T  22648312 tttgggatgagattgaaaatgcattgattgataataaaaatgggagtaagatatttattacaacaagaaata 22648241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 22458832 - 22458735
Alignment:
Q  26 acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggag 123  Q
    ||||||||| |||| ||||||||||| |||||| ||||||||||| |  ||||  ||||||||  ||||| || | ||| ||||||||||| ||||||    
T  22458832 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggag 22458735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 22481813 - 22481716
Alignment:
Q  26 acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaagctttacgaacaaaaaggag 123  Q
    ||||||||| |||| ||||||||||| |||||| ||||||||||| |  ||||  ||||||||  ||||| || | ||| ||||||||||| ||||||    
T  22481813 acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggag 22481716  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 21937274 - 21937317
Alignment:
Q  24 ggacactttgaatgtcgtgtatggatcacagtgtcacaatcata 67  Q
    ||||||||||| ||||||||||||||||||||||| ||| ||||    
T  21937274 ggacactttgattgtcgtgtatggatcacagtgtctcaagcata 21937317  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 30989435 - 30989376
Alignment:
Q  239 tttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttat 298  Q
    |||||||||||| ||||||| || ||| | |||| |||||||||| ||||||||||||||    
T  30989435 tttttgggatgatattgaatttgctgtaattgataataaaaatggaagtaagatatttat 30989376  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 30989650 - 30989607
Alignment:
Q  24 ggacactttgaatgtcgtgtatggatcacagtgtcacaatcata 67  Q
    ||||||||||| |||||||||||||||| |||||| ||||||||    
T  30989650 ggacactttgattgtcgtgtatggatcatagtgtctcaatcata 30989607  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 22431329 - 22431247
Alignment:
Q  213 gtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatt 295  Q
    |||||||||||||||||| |  ||| ||||||| |||| ||||||| || | ||| |||| | ||||||||| ||||||||||    
T  22431329 gtgtttgatgatgtatgggagtcaaatttttggtatgatattgaatttgctatgattgataacaaaaatggttgtaagatatt 22431247  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 22208126 - 22208175
Alignment:
Q  9 agcagagaggttgtgggacactttgaatgtcgtgtatggatcacagtgtc 58  Q
    |||| ||||||| | ||| ||||||| |||||||||||||||||||||||    
T  22208126 agcaaagaggttattggatactttgattgtcgtgtatggatcacagtgtc 22208175  T

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Target: scaffold1439 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 1808 - 1714
Alignment:
Q  198 aagaggtatatttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagat 292  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  1808 aagaggtatgtttttgtgtttgatgatgtatggaacacaagtttttgggatgagattgaatatgttgtgagtgataataaaaatggtagtaagat 1714  T

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Target: scaffold1439; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 1686 - 1650
Alignment:
Q  276 aaaaatggtagtaagatatttattaccagaagaaata 312  Q
    |||||||||||||||||||||||||||| ||||||||    
T  1686 aaaaatggtagtaagatatttattaccacaagaaata 1650  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 40580244 - 40580327
Alignment:
Q  219 gatgatgtatggaacacaagtttttgggatgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 302  Q
    |||||||||||||||| ||||||||||| ||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  40580244 gatgatgtatggaacaaaagtttttggggtgatattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580327  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 302
Target Start/End: Original strand, 40580333 - 40580387
Alignment:
Q  248 tgagattgaatatgatgtgagtgatgataaaaatggtagtaagatatttattacc 302  Q
    |||||||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  40580333 tgagattgaatatgctatgagtgataataaaaatggtagtaagatatttattacc 40580387  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 29610902 - 29610815
Alignment:
Q  38 tcgtgtatggatcacagtgtcacaatcatacaacactgaagtattgctgagacacatgttggagaag-ctttacgaacaaaaaggaga 124  Q
    |||||||||||||||||| |||||||||||||| |  |||| |||||| ||   |||||||||||||  ||||| ||||||| |||||    
T  29610902 tcgtgtatggatcacagtatcacaatcatacaatatagaaggattgctaaggggcatgttggagaagtttttacaaacaaaagggaga 29610815  T

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