View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4980_high_8 (Length: 314)
Name: NF4980_high_8
Description: NF4980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4980_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 138 - 304
Target Start/End: Complemental strand, 2599033 - 2598867
Alignment:
| Q |
138 |
atgttatttaatgaaattttctagtggacgacccaaatgataattgagttaggtcttctaagcccgtatgattaaactagcccttattaatttatcaata |
237 |
Q |
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| T |
2599033 |
atgttatttaatggaattttcttgtggacgactcaaatgataattgagttagatcttctaagcccgtatgattaaactagcccttattaatttatcaata |
2598934 |
T |
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| Q |
238 |
aattttagtcagaagaatttgtcaaataacattattattttctcattttcactattaattgtctctg |
304 |
Q |
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| T |
2598933 |
aattttagttagacaaatttgtcaaataacattattattttctcattttcactattaattgtttctg |
2598867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2599216 - 2599081
Alignment:
| Q |
1 |
gttagtgctctggtaggatcgatgtggttatttctatacaacaaagggttgttatcctgatttttacaccgtcacaaggtgctatttctccaaaggtggt |
100 |
Q |
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| T |
2599216 |
gttagtgctctggtaggatcgatgtggttatttctataaaacaaagggttgttatagtgatttttacatcgtcataaggtgttatttctccaaaggtggt |
2599117 |
T |
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| Q |
101 |
acaggaggttgtatcgggtgctgtaatggaatttct |
136 |
Q |
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| T |
2599116 |
acaggaggttgtatcgtgtgctttaatagaatttct |
2599081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 138 - 299
Target Start/End: Complemental strand, 2605734 - 2605573
Alignment:
| Q |
138 |
atgttatttaatgaaattttctagtggacgacccaaatgataattgagttaggtcttctaagcccgtatgattaaactagcccttattaatttatcaata |
237 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||| | || |||||||||| |||||||||||||||||||| |
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| T |
2605734 |
atgttatttaatggaattttctagtggacgacccaaaggataattgggttggatcttctaagcacatacgattaaactaacccttattaatttatcaata |
2605635 |
T |
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| Q |
238 |
aattttagtcagaagaatttgtcaaataacattattattttctcattttcactattaattgt |
299 |
Q |
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||||||||||| | ||| |||| |||||||||||| ||||||||||||||||||||||| |
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| T |
2605634 |
aattttagtcaaactaatcagtcatataacattattacattctcattttcactattaattgt |
2605573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 2605920 - 2605784
Alignment:
| Q |
1 |
gttagtgctctggtaggatcgatgtggttatttctatacaacaaagggttgttatcctgatttttacaccgtcacaaggtgctatttctcc-aaaggtgg |
99 |
Q |
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| T |
2605920 |
gttagtgctatggtaggattgaggtggtttttgatatacaacaaagggttgttatcctaattttcacatcgtttgaaggtactatttcaccaaaaggtgg |
2605821 |
T |
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| Q |
100 |
tacaggaggttgtatcgggtgctgtaatggaatttct |
136 |
Q |
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| T |
2605820 |
tacataaggttgtatcgtgtgctttaatggaaattct |
2605784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 22186343 - 22186440
Alignment:
| Q |
202 |
cgtatgattaaactagcccttattaatttatcaataaattttagtcagaagaatttgtcaaataacattattattttctcattttcactattaattgt |
299 |
Q |
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|||| |||||||||||| ||||||||| ||||||||||||||||||| | ||| ||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
22186343 |
cgtacgattaaactagcacttattaatctatcaataaattttagtcaaaccaatctgtcatataacattattactttctcattttcactattaattgt |
22186440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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