View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-10 (Length: 666)
Name: NF4981-Insertion-10
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-10 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 9 - 666
Target Start/End: Complemental strand, 28520324 - 28519669
Alignment:
| Q |
9 |
tctgaacatggaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcaattaaacaaccaggctttgttgtaggaagatccatt |
108 |
Q |
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| T |
28520324 |
tctgaacatggaggataaccaaatgcttatcgctccttttaatgatgtcgagttttctgaagcggttaaaaaatcaggctttgttgcaggaagatccatt |
28520225 |
T |
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| Q |
109 |
acagataatgtctttgtcgccttagaaatcatacattatttgaagtgcaggactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaac |
208 |
Q |
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| T |
28520224 |
acagaaaatgtgtttgtcgccttagaaatcatatattatttgaagtgcaagactcgaggtaagaaaggggaagcaacattaaaaatagatattagcaaat |
28520125 |
T |
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| Q |
209 |
catatgatcgtgttgattggaattatttgtttagcattttggacaggatgggtttcaactcagtgtggattacatgtgcgttactacaataacttaccat |
308 |
Q |
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| T |
28520124 |
catatgatcgtgttgaatggaattatttttttagaattttggaaaggatgggtttcaactcagtgtggattacatgtgtgttactacagtaagttaccat |
28520025 |
T |
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| Q |
309 |
gttctgatcaatgataacaaagtaggtcctatacatccaaggagaggtataagtcaaggtgacccttttcaccgtatgtgtttattatttgtgatgaagg |
408 |
Q |
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| T |
28520024 |
gttctgatcaatgataacaaagtaggtctaatacatccaaggagaggtataagtcaaggtgacccttttcaccatatgtgtttattatttgtgatgaagg |
28519925 |
T |
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| Q |
409 |
tatgactgctctgatcaaacaagctgaacaaaatagaattctccatggagttcaggtttgccgaagagcgcccactattagtcatctcttatatgcaaat |
508 |
Q |
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| T |
28519924 |
tatgactgctctgatcaaacaagctgaacgaaatagaattctccatggagttcaggtttgccgaagagcgcccactattagtcatctcttattttcaaat |
28519825 |
T |
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| Q |
509 |
catagctttcttttgtttagagcaaatgagtctgaaacaaagatttgaaagatattctggatacttttgctaaagcctcatgtcagttgatcaatatgnn |
608 |
Q |
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| T |
28519824 |
gatagctttcttttatttagagcaaatgagtctgaaacaaagatttgaaaggtattctggatacttttgctaaagcctcatgtcagttgatcaatatg-a |
28519726 |
T |
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| Q |
609 |
nnnnntcatagatattttttagtaggaatcctctgcggtaaaaggctaccctccctaa |
666 |
Q |
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| T |
28519725 |
aaaaatcatagatattttttagtaggaatcccctacggt-aaaggctaccctccctaa |
28519669 |
T |
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