View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-11 (Length: 461)
Name: NF4981-Insertion-11
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-11 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 6e-75; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 231 - 461
Target Start/End: Complemental strand, 43323248 - 43322995
Alignment:
| Q |
231 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaac--------------aaatgtgtaattataga |
316 |
Q |
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| T |
43323248 |
gttcatacaactctaatcaacatgactctgtataaaacggataaaagctagctagcagatgattcaaaccagatgattcaaacaaatctgtaattataga |
43323149 |
T |
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| Q |
317 |
tattcatagacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagag---------nnnnnnnnctaatttattc |
407 |
Q |
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| T |
43323148 |
tattcataaacaaaatgatattgtttacaaagtacaaatcccattgtcatataccacttgggtttaaaagagaaaaaaaaaaaaaaaaactaatttattc |
43323049 |
T |
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| Q |
408 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
461 |
Q |
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| T |
43323048 |
ctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
43322995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 43324533 - 43324418
Alignment:
| Q |
13 |
aatcttcattggtgatattaattgttccaccatcaataattacattgtattgtatgatacttgagatcatcaaattaaattatacggagtccaaaccaaa |
112 |
Q |
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| T |
43324533 |
aatcttcattggtgatatt----gttccaccatcaataattacattgtattgtatgatacttgagatcatcaaattaaattatacggagtcc-----aaa |
43324443 |
T |
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| Q |
113 |
cagaagagtctttttcaacaaacac |
137 |
Q |
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| T |
43324442 |
cagaagagtccttttcaacaaacac |
43324418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 43324276 - 43324216
Alignment:
| Q |
143 |
aaccaaatatatttcagttaccacttgattgatagtgtcagaatgagtttaattggtaatatatt |
207 |
Q |
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| T |
43324276 |
aaccaaatatatttcagttaccacttgat----agtgtcagaatgagtttaattggtaacatatt |
43324216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 41228180 - 41228119
Alignment:
| Q |
400 |
atttattcctccaattggaagcatgttttccttgtaaattcctatatgacaattctctcctt |
461 |
Q |
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| T |
41228180 |
atttattccaccaattggaagaaggtcttccttgtaaactgctatatgacaatattctcctt |
41228119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Complemental strand, 42446604 - 42446571
Alignment:
| Q |
402 |
ttattcctccaattggaagcatgttttccttgta |
435 |
Q |
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| T |
42446604 |
ttattcctccaattggaagaatgttttccttgta |
42446571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 435
Target Start/End: Original strand, 9593586 - 9593619
Alignment:
| Q |
402 |
ttattcctccaattggaagcatgttttccttgta |
435 |
Q |
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| T |
9593586 |
ttattcctccaattggaagaatgttttccttgta |
9593619 |
T |
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