View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-12 (Length: 369)
Name: NF4981-Insertion-12
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 43 - 359
Target Start/End: Complemental strand, 23669054 - 23668738
Alignment:
| Q |
43 |
atagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgttta |
142 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23669054 |
atagcaagctttcaacacttttatgtgcatatttctcaatcatgtagaaaccaatttgttccttcaccactctctgttcctatattcaaataattgttta |
23668955 |
T |
|
| Q |
143 |
tatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaacccttta |
241 |
Q |
| |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
23668954 |
tatgtctcaataaattaatcctcagattttgcatgaacttaaaaagaatggtttcaaattttcatatctattgag-aaaaaaattcagagaaacccatta |
23668856 |
T |
|
| Q |
242 |
agtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaac |
341 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
23668855 |
agtaataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtatattaaggaataaatcaaacagaattcacactttttataaac |
23668756 |
T |
|
| Q |
342 |
attcaaatgaaaagatta |
359 |
Q |
| |
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|||||| ||||||||||| |
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| T |
23668755 |
attcaattgaaaagatta |
23668738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 77 - 166
Target Start/End: Original strand, 5827018 - 5827107
Alignment:
| Q |
77 |
ctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttatatgcctcaataaattaatcctca |
166 |
Q |
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| T |
5827018 |
ctcaatcatgtagaaaccaatttgttctttcaccattctgtgttgttatattcaaataattgtctatatgtctcaataaattaatcctca |
5827107 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 5827125 - 5827216
Alignment:
| Q |
267 |
tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta |
359 |
Q |
| |
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||||||||| ||||||||||||| |||| |||| |||| ||||||||||| || |||| ||| |||||||| |||| |||| ||||||||| |
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| T |
5827125 |
tcattaaaggaaaaagaacaaatctttgacatataatgagcaataaatcaaataggattctcac-tttcataaccattaaaataaaaagatta |
5827216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 40 - 359
Target Start/End: Complemental strand, 9369920 - 9369600
Alignment:
| Q |
40 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
9369920 |
acaatagcaagctttcaacacttttatgtgcatatttctcaatcatgtaaaaatcaatttgttccttcaccactctctattcctatatttaaataattgt |
9369821 |
T |
|
| Q |
140 |
ttatatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaaccct |
238 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9369820 |
ttatatgtctcaataaattaatcctcacattttgcatgaatttaaaaagaatggtttcaaattttcatatctattgagtaaaaaaattcagagaaaccta |
9369721 |
T |
|
| Q |
239 |
ttaagtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcata |
338 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9369720 |
ttaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcattgatgtatattgaggaataaatcaaacatgattcacacttttcata |
9369621 |
T |
|
| Q |
339 |
aacattcaaatgaaaagatta |
359 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
9369620 |
aacattcaaatgaaaagatta |
9369600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 40 - 359
Target Start/End: Original strand, 47817657 - 47817976
Alignment:
| Q |
40 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgt |
139 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||||||||||||||||| |
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| T |
47817657 |
acaatagcaagctttcaacactattatgtgcagatttctcaatcatgtagaaacctatttgttcattcaccactctatgttcctatattcaaataattgt |
47817756 |
T |
|
| Q |
140 |
ttatatgcctcaataaattaatcctcaga-tttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagnnnnnnnnntcagagaaaccct |
238 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
47817757 |
ttatatgtctcaataaattaatcctcaaattttgcatgaacttaaaaagaatggtttcaaattttcatatctattgagaaaataaattcagagaaaccca |
47817856 |
T |
|
| Q |
239 |
ttaagtaataagattgacactttactaatcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcata |
338 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
47817857 |
ttaaataataagattgacactttactaatcattaaaggtaaaagaacaaatcgttgatgtatattgaggaataaatgaaacaggattcacacttttcat- |
47817955 |
T |
|
| Q |
339 |
aacattcaaatgaaaagatta |
359 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
47817956 |
aacattcaaatgaaaagatta |
47817976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 44 - 166
Target Start/End: Complemental strand, 26049402 - 26049280
Alignment:
| Q |
44 |
tagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaataattgtttat |
143 |
Q |
| |
|
||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||| ||||||| ||| | || ||||||||||||| ||| || |
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| T |
26049402 |
tagcaagctataaacacttttcggtgcaaatttctcaatcatgtagaaaacaatttgttctttcaccattctgtgttgttatattcaaataactgtccat |
26049303 |
T |
|
| Q |
144 |
atgcctcaataaattaatcctca |
166 |
Q |
| |
|
||| ||||||||||||||||||| |
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|
| T |
26049302 |
atgtctcaataaattaatcctca |
26049280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 359
Target Start/End: Original strand, 328695 - 328786
Alignment:
| Q |
267 |
tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta |
359 |
Q |
| |
|
||||||| | |||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||| |
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|
| T |
328695 |
tcattaatggtaaaagaacaaatctttgacatataatgaggaataaatcaaacaggattcacac-tttcataaccattaaaatgaaaagatta |
328786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 26049262 - 26049171
Alignment:
| Q |
267 |
tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagatta |
359 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||| | || |||||||||||||| |||| ||| |||||||| |||| |||||||||||||| |
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|
| T |
26049262 |
tcattaaaagtaaaagaacaaatctttgacatataataagtaataaatcaaacaggattctcac-tttcataaccattaaaatgaaaagatta |
26049171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 328549 - 328641
Alignment:
| Q |
40 |
acaatagcaagctttcaacacttttatgtgcagatttctcaatcatgtagaaaccaatttgttccttcaccactctctattcctatattcaaat |
133 |
Q |
| |
|
|||||| |||||| || || ||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||| ||| | ||| ||||||||||| |
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|
| T |
328549 |
acaatatcaagctatccacgcttttcggtgca-attcctcaatcatatagaatccaatttgttccttcaccattctgtgttcttatattcaaat |
328641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 32838611 - 32838530
Alignment:
| Q |
278 |
aaaagaacaaatcgttgatgtatattgaggaataaatcaaacagaattcacacttttcataaacattcaaatgaaaagattaa |
360 |
Q |
| |
|
||||||||||||| |||| |||| |||| |||||| |||||| |||| || ||||||||| |||| ||||||||||||||| |
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|
| T |
32838611 |
aaaagaacaaatctttgacatataatgagagataaattaaacaggattctca-ttttcataatcattaaaatgaaaagattaa |
32838530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 267 - 359
Target Start/End: Complemental strand, 10241026 - 10240933
Alignment:
| Q |
267 |
tcattaaagttaaaagaacaaatcgttgatgtatattgaggaataaatcaa--acagaattcacacttttcataaacattcaaatgaaaagatta |
359 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||| ||||||| |||||| || | |||||||| ||||||| ||||||||||||||||||| |
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|
| T |
10241026 |
tcattaaaggtaaaagaacaaatcattgatatataacgaggaatgaatcaaccacgggattcacac-tttcatatccattcaaatgaaaagatta |
10240933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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