View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4981-Insertion-13 (Length: 326)
Name: NF4981-Insertion-13
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-13 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0381 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 22789593 - 22789911
Alignment:
| Q |
8 |
gaaccaaccggtgttagctaaagctctatcaagcggttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccgga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22789593 |
gaaccaaccggtgttagctaaagctctatcaagccgttcttccaccgcatgcggcatgcccaaacttttgaaccacgtaaaaggatacccctccaccgga |
22789692 |
T |
|
| Q |
108 |
acatccaccaatcctgaatcaagtacctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgt |
207 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
22789693 |
acatacaccaatcctgaatcaagtaccgcctgcctgaaaccattaatcaaccaactaggtcggaggttccttcctcttttttcacttgcatccatgatgt |
22789792 |
T |
|
| Q |
208 |
cgttaaaatcacccagaatacaccatggtcctgcaaactgattagccagaaatttaaggaaatccgacgcagctcgcctacgcctccttcagggtacccg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
22789793 |
cgttaaaatcacccagaatacaccatggtcctgcaaactgattagccagaaatttaaggaaatccaacgcatctcgcctacgcctccttcagggtacccg |
22789892 |
T |
|
| Q |
308 |
tagtaaccggtgaatctcc |
326 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22789893 |
tagtaaccggtgaatctcc |
22789911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 54565071 - 54565363
Alignment:
| Q |
21 |
ttagctaaagctctatcaagcggttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatc |
120 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| || ||| || || |||||||||||||||| |||||||||||||||||||| |||||||| | |
|
|
| T |
54565071 |
ttagctaaagctctgtcaagatgttcttccaccgcacgcaacgtacctgaacttttgaaccacgtaaacggatacccctccaccggaacgtccaccaaac |
54565170 |
T |
|
| Q |
121 |
ctgaatcaagtacctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacc |
220 |
Q |
| |
|
|||||||||| ||| | ||| |||||||| ||||||||||| ||| | ||||||||||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
54565171 |
ctgaatcaagaaccgcttgcctgaaaccactaatcaaccaattagaccgaaggttccttcctctttttttacttgcatccataatgtcgttaaaatcacc |
54565270 |
T |
|
| Q |
221 |
cagaatacaccatggtcctgcaaactgattagccagaaatttaaggaaatccgacgcagctcgcctacg-cctccttcagggtacccgtagta |
312 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | || |||||||||||||||||||| |
|
|
| T |
54565271 |
catgatacaccaaggtcctgcaaactgattagccagaaatttaaggaaatcccacgctgctcgcctatgtcccccttcagggtacccgtagta |
54565363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 220
Target Start/End: Complemental strand, 14478394 - 14478204
Alignment:
| Q |
30 |
gctctatcaagcggttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatcctgaatcaa |
129 |
Q |
| |
|
|||||||||||| | ||||||| |||| | || ||||| || ||||||||||||| ||||| || ||||||||||||||||| ||||| || || |||| |
|
|
| T |
14478394 |
gctctatcaagccgctcttccatcgcacgtggtgtgcctaagcttttgaaccacgtgaaagggtaaccctccaccggaacatctaccaagcccgagtcaa |
14478295 |
T |
|
| Q |
130 |
gtacctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacc |
220 |
Q |
| |
|
| ||| | ||| |||||||||| || |||||| ||| | ||||| ||||||||||||||||| |||| ||| || || ||||||||||| |
|
|
| T |
14478294 |
gcaccgcttgcctgaaaccatttattaaccaattagcacgaaggtttcttcctcttttttcactagcatccattatatcattaaaatcacc |
14478204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 222
Target Start/End: Complemental strand, 44491597 - 44491552
Alignment:
| Q |
177 |
cttcctcttttttcacttgcattcatcatgtcgttaaaatcaccca |
222 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||||||||| |
|
|
| T |
44491597 |
cttcctcttttttcacctgcatccattatgtcgttaaaatcaccca |
44491552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 326
Target Start/End: Complemental strand, 5154 - 4861
Alignment:
| Q |
34 |
tatcaagcggttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatcctgaatcaagtac |
133 |
Q |
| |
|
||||||| |||||||||||||| | || || || ||| | |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
5154 |
tatcaagtcgttcttccaccgcacgaggtgtacctaaactcttgaaccaagtaaatggataaccctccaccggaacatcgaccaaacctgaatccagcac |
5055 |
T |
|
| Q |
134 |
ctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccat |
233 |
Q |
| |
|
| | ||| | |||||||| || |||| ||| | || || || |||||||||||||| |||| ||| || || || |||||||| || || ||||| |
|
|
| T |
5054 |
cgcttgcctaaaaccatttattaaccggttagaacgaagatttctacctcttttttcactagcatccattatatcattgaaatcaccaaggatgcaccaa |
4955 |
T |
|
| Q |
234 |
ggtcctgcaaactgattagccagaaattt--aaggaaatccgacgcagctcgcctacg-cctccttcagggtacccgtagtaaccggtgaatctcc |
326 |
Q |
| |
|
|| |||| |||||||||| || || | | |||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
4954 |
gggcctgtaaactgatta--cataactgtcgaaggaaatcccacgcaagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctcc |
4861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 34 - 326
Target Start/End: Original strand, 27014629 - 27014922
Alignment:
| Q |
34 |
tatcaagcggttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatcctgaatcaagtac |
133 |
Q |
| |
|
||||||| |||||||||||||| | || || || ||| | |||||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| || || |
|
|
| T |
27014629 |
tatcaagtcgttcttccaccgcacgaggtgtacctaaactcttgaaccaagtaaatggataaccctccaccggaacatcgaccaaacctgaatccagcac |
27014728 |
T |
|
| Q |
134 |
ctcctgcgtgaaaccattaatcaaccaactaggttggaggttccttcctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccat |
233 |
Q |
| |
|
| | ||| | |||||||| || |||| ||| | || || || |||||||||||||| |||| ||| || || || |||||||| || || ||||| |
|
|
| T |
27014729 |
cgcttgcctaaaaccatttattaaccggttagaacgaagatttctacctcttttttcactagcatccattatatcattgaaatcaccaaggatgcaccaa |
27014828 |
T |
|
| Q |
234 |
ggtcctgcaaactgattagccagaaattt--aaggaaatccgacgcagctcgcctacg-cctccttcagggtacccgtagtaaccggtgaatctcc |
326 |
Q |
| |
|
|| |||| |||||||||| || || | | |||||||||| ||||| |||||||| || |||||||||||||||||||| ||||||| ||||| |
|
|
| T |
27014829 |
gggcctgtaaactgatta--cataactgtcgaaggaaatcccacgcaagacgcctacgtcccccttcagggtacccgtagtatccggtgagtctcc |
27014922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 42329930 - 42329843
Alignment:
| Q |
43 |
gttcttccaccgcatgcggcgtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatcctgaatcaag |
130 |
Q |
| |
|
|||| ||||||||||| || || |||||| | |||||||||||||| ||||| ||||||||||||||||||| ||| || |||||||| |
|
|
| T |
42329930 |
gttcctccaccgcatggggggtacccaaactcttgaaccacgtaaagggatagccctccaccggaacatccagcaaaccggaatcaag |
42329843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 130
Target Start/End: Original strand, 11608949 - 11609016
Alignment:
| Q |
63 |
gtgcccaaatttttgaaccacgtaaaaggatacccctccaccggaacatccaccaatcctgaatcaag |
130 |
Q |
| |
|
||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||| || |||||||| |
|
|
| T |
11608949 |
gtgcccaaactcttgaaccacgtaaagggatagccctccatcggaacatccagcaaaccggaatcaag |
11609016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 20926731 - 20926659
Alignment:
| Q |
180 |
cctcttttttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattag |
252 |
Q |
| |
|
||||||||||||||||||| || || || |||||||| || | |||||||| ||||| |||||| ||||||| |
|
|
| T |
20926731 |
cctcttttttcacttgcatccaaaatatcattaaaatcgccaaaaatacaccgtggtcttgcaaattgattag |
20926659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 41328811 - 41328747
Alignment:
| Q |
188 |
ttcacttgcattcatcatgtcgttaaaatcacccagaatacaccatggtcctgcaaactgattag |
252 |
Q |
| |
|
||||||||||| || || || |||||||| || | ||||||||||||||||||||| ||||||| |
|
|
| T |
41328811 |
ttcacttgcatccaaaatatcattaaaatcgccaaaaatacaccatggtcctgcaaattgattag |
41328747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University