View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-14 (Length: 206)
Name: NF4981-Insertion-14
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 36113354 - 36113478
Alignment:
| Q |
84 |
gaagcaaaccaacgcaatttgagttgatttggtttttaacgagaccacaca--atttataaactttgttaataattttgattatattagctgcaacaatt |
181 |
Q |
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| T |
36113354 |
gaagcaaaccaacgcaatttgagttgatttggtttttaacgagaccagacataatttaaaaactttgttaataattttgattatattagctgcaacaatt |
36113453 |
T |
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| Q |
182 |
aactagtctgcaatgattagcaaac |
206 |
Q |
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| T |
36113454 |
aactagtctgcaatgattagcaaac |
36113478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 188
Target Start/End: Complemental strand, 8691244 - 8691201
Alignment:
| Q |
145 |
tttgttaataattttgattatattagctgcaacaattaactagt |
188 |
Q |
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| T |
8691244 |
tttgtcaataattttgattatattggctgcaacaatttactagt |
8691201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 33639830 - 33639780
Alignment:
| Q |
154 |
aattttgattatattagctgcaacaattaactagtctgcaatgattagcaa |
204 |
Q |
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| T |
33639830 |
aattttgattatattagcagcaacaattaactagttttcaatgattagcaa |
33639780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 48624792 - 48624730
Alignment:
| Q |
124 |
gagaccacacaatttataaactttgttaataattttgattatattagctgcaacaattaacta |
186 |
Q |
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| T |
48624792 |
gagaacacacaatttaaaaaatatgtcaacaattttgattatattagcggcaacaattaacta |
48624730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 13044197 - 13044246
Alignment:
| Q |
151 |
aataattttgattatattagctgcaacaattaactagtctgcaatgatta |
200 |
Q |
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| T |
13044197 |
aataattttgattatattagttacaacaattaactagtttgcaacgatta |
13044246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 13114195 - 13114244
Alignment:
| Q |
151 |
aataattttgattatattagctgcaacaattaactagtctgcaatgatta |
200 |
Q |
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| T |
13114195 |
aataattttgattatattagttacaacaattaactagtttgcaacgatta |
13114244 |
T |
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