View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4981-Insertion-2 (Length: 960)
Name: NF4981-Insertion-2
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 618; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 12 - 710
Target Start/End: Original strand, 4383186 - 4383884
Alignment:
| Q |
12 |
gtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaattacaaaccaatcatgtca |
111 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4383186 |
gtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaatcacaaaccaatcatgtca |
4383285 |
T |
|
| Q |
112 |
aggttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatcttaactgctacaaaacaaacgcaacgcaaaatgcaagaataga |
211 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4383286 |
atgttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatgttaactgctacaaaacaaacgcaacgcaaaatgcaagtataga |
4383385 |
T |
|
| Q |
212 |
ggttatttttatacaaatactcttctatcatcactagtaatcgtttacatggccccttgtgtatgcttagcaattaacttcttcatcagaagtccatatg |
311 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
4383386 |
ggttatttttatacaaatacttttctatcctcactagtaatcgtttacatggccccttgtgtatgcttagcgattaacttcttcatcaaaagtccatatg |
4383485 |
T |
|
| Q |
312 |
aaaaattcgcattaaatagcaaagctcaatagaaaataannnnnnngaagtcaatacttgatatatattataaaggcaatataagtacttgtagtgtgat |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4383486 |
aaaaattcgcattaaatagcaaagctcaatagaaaataatttttttgaagtcaatacttgatatagattataaaggcaatataagtacttgtagtgtgat |
4383585 |
T |
|
| Q |
412 |
attgtgataagaacctaatgacaaatgatggaaatacttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctggg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4383586 |
attgtgataagaacctaatgacaaatgatggaaattcttctatcagctataaaacctaaattgttttgcaaatgattctgttttcatcattacatctggg |
4383685 |
T |
|
| Q |
512 |
cagtgacctgcggtgtacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgc |
611 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4383686 |
cagtgacctgcggtttacgacttgtattcactgatagtcgatcaagcatagcaaagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgc |
4383785 |
T |
|
| Q |
612 |
aatggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctgctgtcaaagatg |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4383786 |
aatggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaaaactacaatgcagcttctctgctgtcaaagatg |
4383884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 7 - 489
Target Start/End: Original strand, 4768356 - 4768841
Alignment:
| Q |
7 |
agattgtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaattacaaaccaatca |
106 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
4768356 |
agattgtgtcttccaagtttgcctcctgtgcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaccaaagaatcacaaaccaatca |
4768455 |
T |
|
| Q |
107 |
tgtcaaggttcttctacatatcccacccttgcataacttctcaaaaatagtatagcataatcttaactgctacaaaacaaacgcaacgcaaaatgcaaga |
206 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| || |||||||||| |
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|
| T |
4768456 |
tgtcaagtttcttctacatat-ccacccttgcataacttctaaaaaatagtatagcaaaatgctaactgctacaaaacaaacagcacacaaaatgcaatt |
4768554 |
T |
|
| Q |
207 |
atagaggttatttttatacaaatactcttctatcatcactagtaatcgtttacatggc----cccttgtgtatgcttagcaattaacttcttcatcagaa |
302 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |||||||||||| ||| ||| | || || ||||| ||||| |||| ||||||||||| || |
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|
| T |
4768555 |
atagaggttatttttatacaattacttttctatcctcactagtaatcatttgcatttctattcctctgcgtatggttagccattatcttcttcatcaaaa |
4768654 |
T |
|
| Q |
303 |
gtccatatgaaa--aattcgcattaaatagcaaagctcaatagaaaataannnnnnngaagtcaatacttgatatatattataaaggcaatataagtact |
400 |
Q |
| |
|
|||||||||||| || |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4768655 |
gtccatatgaaatttttttccattaaatagtcaagctcaatagaaaataacttttttgaagtcaatacttgatatagattataaaggcaatataagta-- |
4768752 |
T |
|
| Q |
401 |
tgtagtgtgatattgtgataagaacctaatgacaaatgatggaaatacttctatcagcta-taaaacctaaattgttttgcaaatgattc |
489 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
4768753 |
-gtagtgtgatattgtgatagaaacctaatgacaaatgatggaaatacttctatcaggtactaaaagataaattgttttgcaaatgattc |
4768841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 718 - 945
Target Start/End: Original strand, 4383938 - 4384169
Alignment:
| Q |
718 |
actccgtaatctttggtatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagatgaaacttattagtattgatg |
817 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
4383938 |
actccgtaatgtttgctatgactatgatagacaacagaaactcagtggcaatcaacagaatgaatgcctactctcaagaaggaacttattagtattgatg |
4384037 |
T |
|
| Q |
818 |
atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgct-aaaaggaattcgttgagccaaaagatgatcaagagaagc-aac |
915 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4384038 |
atgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaaaaggaattcgttgagccaaaagatgatcaagagaagcaaac |
4384137 |
T |
|
| Q |
916 |
agagtcttc-aatg-cacagctaatgagataa |
945 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |
|
|
| T |
4384138 |
agagtcttcaaatgccacagctaatgagataa |
4384169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 4111622 - 4111366
Alignment:
| Q |
7 |
agattgtgccttccaagtttgcctcatgtgcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaattacaaaccaatca |
106 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4111622 |
agattgtgccttccaagtttgcctcccgagcttacctctgtaagctcgtatgtactagatgattcctgcaaacaattaacaaagaatcacaaaccaatca |
4111523 |
T |
|
| Q |
107 |
tgtcaaggttcttctacatatcccacccttgcataacttctcaaaaatagtatag-----cataatcttaactgctacaaaacaaacgcaacgcaaaatg |
201 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| || ||||||| |
|
|
| T |
4111522 |
tgtcaatgttcttctacatatcccacccttgcataacttctcaaaaatagtatagcaaaacaaaatactaactgctacaaaacaaacagcacacaaaatg |
4111423 |
T |
|
| Q |
202 |
caagaatagaggttatttttatacaaatactcttctatcatcactagtaatcgttta |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||| |
|
|
| T |
4111422 |
caagaatagaggttatttttatacaattacttttctatcctcactagtaatcattta |
4111366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 611 - 698
Target Start/End: Original strand, 4768899 - 4768984
Alignment:
| Q |
611 |
caatggaattgtagtatttaaccacaacattataccctataacactaagaattgcatataatcgaaacactacaatgcagcttctctg |
698 |
Q |
| |
|
|||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
4768899 |
caatcgaattgtagtatttaaccacagcattgtaccctataacactaagaattgc--ataatcgaaaaacaacaatgcagcttctctg |
4768984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 565 - 613
Target Start/End: Original strand, 4385434 - 4385482
Alignment:
| Q |
565 |
aagcgagtagagctaaaagtgcaacgagcacaggaaggtaatcttgcaa |
613 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4385434 |
aagcgagcagagctaaaagtgcaacgagcacatgaaggtaatcttgcaa |
4385482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 819 - 914
Target Start/End: Complemental strand, 36849704 - 36849608
Alignment:
| Q |
819 |
tgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgct-aaaaggaattcgttgagccaaaagatgatcaagagaagcaa |
914 |
Q |
| |
|
||||| ||| |||| |||||| ||||||| ||||||||| |||||| ||||||| |||||||| || ||||||||||| ||| |||||||||||| |
|
|
| T |
36849704 |
tgatgtagaggacaaacaagaaggaattggattcaaccaggaggggacagatgctcaaaaggaagtcagtgagccaaaagctgaacaagagaagcaa |
36849608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 813 - 914
Target Start/End: Original strand, 16230914 - 16231019
Alignment:
| Q |
813 |
tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaagg---ggatagatgctaaaa-ggaattcgttgagccaaaagatgatcaagag |
908 |
Q |
| |
|
|||||||||||||| ||||||| || |||| ||||||||||||| ||| ||||| ||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
16230914 |
tgatgatgatgaagttgacatacgaggcagaactgggttcaaccagcaggaggggataaatgctaaaaaggaattcgttgagccaaaagacgatcaagag |
16231013 |
T |
|
| Q |
909 |
aagcaa |
914 |
Q |
| |
|
|||||| |
|
|
| T |
16231014 |
aagcaa |
16231019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 803 - 914
Target Start/End: Original strand, 34688665 - 34688780
Alignment:
| Q |
803 |
ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaa-aggaattcgttgagccaaaaga |
898 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| || |||| ||| |||||||| | |||||||| |||||||| ||||| | |||||||||||||| |
|
|
| T |
34688665 |
ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga |
34688764 |
T |
|
| Q |
899 |
tgatcaagagaagcaa |
914 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34688765 |
tgatcaagagaagcaa |
34688780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 803 - 914
Target Start/End: Original strand, 34711077 - 34711192
Alignment:
| Q |
803 |
ttattagtattgatgatgatgaagacgacatacaagatagaattgggttcaacca---gaaggggatagatgctaaa-aggaattcgttgagccaaaaga |
898 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| || |||| ||| |||||||| | |||||||| |||||||| ||||| | |||||||||||||| |
|
|
| T |
34711077 |
ttattattattgatgatgatgaaattgacatacgaggcagaactggattcaaccaacaggaggggataaatgctaaacaggaacttgttgagccaaaaga |
34711176 |
T |
|
| Q |
899 |
tgatcaagagaagcaa |
914 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34711177 |
tgatcaagagaagcaa |
34711192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 863 - 911
Target Start/End: Complemental strand, 35564801 - 35564752
Alignment:
| Q |
863 |
ggatagatgctaa-aaggaattcgttgagccaaaagatgatcaagagaag |
911 |
Q |
| |
|
||||| ||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
35564801 |
ggataaatgctaagaagcaatttgttgagccaaaagatgatcaagagaag |
35564752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 813 - 876
Target Start/End: Original strand, 46520169 - 46520232
Alignment:
| Q |
813 |
tgatgatgatgaagacgacatacaagatagaattgggttcaaccagaaggggatagatgctaaa |
876 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| |||||||| |||||| ||| |||||| |
|
|
| T |
46520169 |
tgatgatgatgaagaggacatacaaggaagaattggattcaaccacgaggggacagacgctaaa |
46520232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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