View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-4 (Length: 898)
Name: NF4981-Insertion-4
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-4 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 523; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 364 - 898
Target Start/End: Original strand, 36720 - 37254
Alignment:
| Q |
364 |
aaaaatagtgttagattactcagttaatcttttttctttaacctctacagttatgcattcttctttcatgctcgctagctgtattttgcaatgtgagcca |
463 |
Q |
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| T |
36720 |
aaaaatagtgttagattactcagttaatcttttttctttaacctctacagttatgcattcttctttcatgctccctagctgtattttgcaatgtgagcca |
36819 |
T |
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| Q |
464 |
gtacctttgcatcggccgcttttctgctgtttccttccaggttttaggccacatgaaaacagtatgtgttctaacgttgggatggttgctatttgattca |
563 |
Q |
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| T |
36820 |
gtacctttgcatcggccgcttttctgctgtttccttccaggttttaggccacatgaaaacagtatgtgttctaacgttgggatggttgctatttgattca |
36919 |
T |
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| Q |
564 |
gagctaaattttaagaatatcatgggaatgggtgtcgcagttattggcatgataatttacagttgggcggcggaggctgagaaaaagtcaaatgaaaaga |
663 |
Q |
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| T |
36920 |
gagctaaattttaagaatatcatgggaatgggtgtcgcagttattggcatgataatttacagttgggcggcggaggctgagaaaaagtcaaatgaaaaga |
37019 |
T |
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| Q |
664 |
cctttcatcatgcaaaaaacagcctaactgaagaagaaatgagattattgacaggtggaatagacaagatttctttgcaagatgttgaatttggtgaaga |
763 |
Q |
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| T |
37020 |
cctttcatcatgcaaaaaacagcctaactgaagaagaaatgagattattgacaggtggaatagacaagatttctttgcaagatgttgaatttggtgaaga |
37119 |
T |
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| Q |
764 |
tcaagaattaagccatgatgataaaatttgatgaaatgagtgcatatagttatgacacacattgctttatttgcatcttttgtctagttaaaatggtagt |
863 |
Q |
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| T |
37120 |
tcaagaattaagccatgatgataaaatttgatgaaatgagtgcatatagttatgacacacatttctttatttgcatcttttgtctagttaaaatggtagt |
37219 |
T |
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| Q |
864 |
aaaagttggtatgcatctgcttgcacttgcacata |
898 |
Q |
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| T |
37220 |
aaaacttggtatgcatctgcttgcacttgcacata |
37254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 109 - 329
Target Start/End: Original strand, 36465 - 36685
Alignment:
| Q |
109 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
208 |
Q |
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| T |
36465 |
cattgactctttcttcacctttgtgttgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccatt |
36564 |
T |
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| Q |
209 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagtt |
308 |
Q |
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| T |
36565 |
caatctctttttcttcttactattggtccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagtt |
36664 |
T |
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| Q |
309 |
cccctattaactctagttggc |
329 |
Q |
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| T |
36665 |
cccctattaactctagttggc |
36685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 36364 - 36402
Alignment:
| Q |
8 |
agtatgagagaatatgagaacttaagttctactattaca |
46 |
Q |
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| T |
36364 |
agtatgagagaatatgagaacttacgttctactattaca |
36402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 419 - 703
Target Start/End: Complemental strand, 8675549 - 8675265
Alignment:
| Q |
419 |
cattcttctttcatgctcgctagctgtattttgcaatgtgagccagtacctttgcatcggccgcttttctgctgtttccttccaggttttaggccacatg |
518 |
Q |
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|||||||||||||||| | ||||||| ||||| ||||| ||||||||||| ||||| || ||||| || || ||||||||||||||||||||||||||| |
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| T |
8675549 |
cattcttctttcatgcaccttagctgtgttttgtaatgtaagccagtacctctgcattgggcgcttctcagcagtttccttccaggttttaggccacatg |
8675450 |
T |
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| Q |
519 |
aaaacagtatgtgttctaacgttgggatggttgctatttgattcagagctaaattttaagaatatcatgggaatgggtgtcgcagttattggcatgataa |
618 |
Q |
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| T |
8675449 |
aaaacattatgtgttctgactttggggtggctgttattcgattcagagctcactttcaagaacatcatgggaatggttcttgcagttgtcggcatggtaa |
8675350 |
T |
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| Q |
619 |
tttacagttgggcggcggaggctgagaaaaagtcaaatgaaaagacctttcatcatgcaaaaaacagcctaactgaagaagaaat |
703 |
Q |
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| T |
8675349 |
tttatagttgggctgtggagcttgaaaagcagccaaatgcaaagactctccctcattcgaaaaacagcctaacagaagaagaaat |
8675265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 135 - 307
Target Start/End: Complemental strand, 8675837 - 8675665
Alignment:
| Q |
135 |
tgcagtcgataggttctcttcaaaagaaatattcgattggatcttttgaattgctaagtaagactgctcccattcaatctctttttcttcttactattgg |
234 |
Q |
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||||||| || |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||| | |||| ||| | |||| |
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| T |
8675837 |
tgcagtcaatcggttctctgcaaaagaaatattcgattggatcttttgaactgctgagtaagactgctcctattcaagctctctctcttattattcttgg |
8675738 |
T |
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| Q |
235 |
tccatttgttgattactacttgagtggcaaattgataaccaactataagatgtctttcggtgcctttgtaagt |
307 |
Q |
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| T |
8675737 |
tccatttgttgattactatctcagtggcaagttgataaccaactttaagatgtcttctggtgccattgtaagt |
8675665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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