View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981-Insertion-5 (Length: 861)

Name: NF4981-Insertion-5
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981-Insertion-5
NF4981-Insertion-5
[»] chr7 (1 HSPs)
chr7 (6-800)||(47436482-47437288)
[»] chr1 (1 HSPs)
chr1 (259-293)||(49011664-49011698)


Alignment Details
Target: chr7 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 6 - 800
Target Start/End: Original strand, 47436482 - 47437288
Alignment:
Q  6 cacatagggttttccactttcatccactctcaatttcgcatcaacaccttcttctttgaacaattcttgaagcctaatcaaattatatttccaacaaaac 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436482 cacatagggttttccactttcatccactctcaatttcgcatcaacaccttcttctttgaacaattcttgaagcctaatcaaattatatttccaacaaaac 47436581  T
Q  106 tgaacaacctccaccggcatcgctaaaccgctaccaccgagaccagagaccaattttgtatcatcaacaaccacaacgaatttatcagaagcggcttcca 205  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436582 tgaacaacctccaccggcatcgctaaaccgcttccaccgagaccagagaccaattttgtatcatcaacaaccacaacgaatttatcagaagcggcttcca 47436681  T
Q  206 ccattttctcacggagaagagcaccgccacggcctttaacaagattgagaaacggatcgacttcatcagcaccatcaatagcgagatcgagacgaggatt 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436682 ccattttctcacggagaagagcaccgccacggcctttaacaaggttgagaaacggatcgacttcatcagcaccatcaatagcgagatcgagacgaggatt 47436781  T
Q  306 atcatcgagaacggagagaggaataccgagagaacgagcttgttcttcggtgcgtttggaggtgggaacgccaatgatgttggtgagttcgccagagttg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47436782 atcatcgagaacggagagaggaataccgagagaacgagcttgttcttcggtgcgtttggaggtgggaacgccaatgatgttggtgagttcgccggagttg 47436881  T
Q  406 agaagttcgccgagtttggagacgacgaaggcagcggtggagccagtgccaaggccgaggaccatgccgcttttgacatattcgacggctttatcggcgg 505  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436882 agaagttcgccgagtttggagacgacgaaggcggcggtggagccagtgccaaggccgaggaccatgccgcttttgacatattcgacggctttatcggcgg 47436981  T
Q  506 cgagttttttgaggtcgtcttgagtgagggttatggctttgacagagaaggagaggggtttggtgcgtagtttaagagaggaaggggtgcgtaggttaag 605  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436982 cgagttttttgaggtcgtcttgagtgagggttatggctttgacggagaaggagaggggtttggtgcgtagtttaagagaggaaggggtgcgtaggttaag 47437081  T
Q  606 tcgtgtggaggcattgaagaatgaggaagagagtgatggtggtgatgagagggataaggatgccattgtttgtttcaggaaattca----------attc 695  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||          ||||    
T  47437082 tcgtgaggaggcattgaagaatgaggaagagagtgatggtggtgatgagagggataaggatgccattgtttgtttgaggaaattcaattcaattcgattc 47437181  T
Q  696 aattcagttctataatcctatctcatctcatctcatttcatttgtgtttggttggtgtg-------ttaagatttagattagattcacccaaccaaacca 788  Q
    ||||||||||||||||||||||||||||||||     ||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||    
T  47437182 aattcagttctataatcctatctcatctcatc-----tcatttgtgtttggttggtgtgttaagatttaagatttagattagattgacccaaccaaacca 47437276  T
Q  789 cactgcatgttt 800  Q
    ||| ||| ||||    
T  47437277 caccgcaggttt 47437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 49011698 - 49011664
Alignment:
Q  259 ggatcgacttcatcagcaccatcaatagcgagatc 293  Q
    ||||| |||||||||||||||||||||||||||||    
T  49011698 ggatcaacttcatcagcaccatcaatagcgagatc 49011664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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