View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981-Insertion-6 (Length: 764)
Name: NF4981-Insertion-6
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 391 - 764
Target Start/End: Complemental strand, 42608909 - 42608535
Alignment:
| Q |
391 |
atgatgttgggcatgtattttaaactacgataacaatctgtatgatttgatgttatattatattaatatgttctttgtgtgcaacctctgagttcttcac |
490 |
Q |
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| T |
42608909 |
atgatgttgggcatgtattttaaactacgataacaatctgtatgatttgatgttatattatatgaatacgttctttgtgtgcaacctccgagttcttcac |
42608810 |
T |
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| Q |
491 |
aaccataatgtattagaccacccaccctaaaaaagaaggtaaacaaaaggaaggggtgtttggaaaaaatgtggttagaaattcatctcttagtgaggtg |
590 |
Q |
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| T |
42608809 |
aaccataatgtattagaccacccaccctaaaaaagaaggtaaacaaaaggaaggggtgtttggaaaaaatgtggttagaaattcatctcttaatgaggtg |
42608710 |
T |
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| Q |
591 |
tacaagtttaaacc-tcggcatctgtatatataatgcaatgttattactaattgagttaagttcacgtgaacgataacccttttttctagtaatatatac |
689 |
Q |
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| T |
42608709 |
tataagtttaaacctttggcatctgtatatataatgtaatgttattactaattgagttaagttcacgtgaacgataactcttttttctagtaatatatac |
42608610 |
T |
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| Q |
690 |
tagtatgagtagtttaattttgactaggaaattaggaatgacactctctgaatcatggcaatgaataacatttga |
764 |
Q |
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| T |
42608609 |
tagtatgagtagtttaattttgactaggaaattaggaatgacactctctgaatcatggcaatgaataacatttga |
42608535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 42609287 - 42608975
Alignment:
| Q |
7 |
agcttttgaggaagagcttaaggcccttttgcctaaagaggtggaaaatgctagggttgaaattgaaaatggaaaccctgcagttcctaatatgatcaag |
106 |
Q |
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| T |
42609287 |
agcttttgaggaagagcttaaggcccttttgcctaaagaggtggaaaatgctagggttgaaattgaaaatggaaaccctgcagttcctaatatgatcaag |
42609188 |
T |
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| Q |
107 |
gaatgtagatcatatccattgtacaagttcatgagagaaactttagggacaagtttgctgacaggtgagaaaattaggtcacctggtgaggactgtgata |
206 |
Q |
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| T |
42609187 |
gaatgtagatcatatccattgtacaagttcatgagagaaactttagggacaagtttgctgacaggtgagaaaattaggtcacctggtgaggactgtgata |
42609088 |
T |
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| Q |
207 |
aggttttcacagcaatgtgtgatggaaggtttattgatcccatgttggattgtctaaaggagtggaatggtgttcctctacctatctgctaggattgtgc |
306 |
Q |
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| T |
42609087 |
aggttttcacagcaatgtgtgatggaaggtttattgatcccatgttggattgtctaaaggagtggaatggtgttcctctacctatctgctaggattgtgc |
42608988 |
T |
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| Q |
307 |
tactctaatgtaa |
319 |
Q |
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| T |
42608987 |
tactctaatgtaa |
42608975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 616 - 656
Target Start/End: Original strand, 43400944 - 43400984
Alignment:
| Q |
616 |
atatataatgcaatgttattactaattgagttaagttcacg |
656 |
Q |
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| T |
43400944 |
atatataatgcaatgctcttactaattgagttaagttcacg |
43400984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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