View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4981-Insertion-7 (Length: 760)
Name: NF4981-Insertion-7
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 653; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 7 - 719
Target Start/End: Original strand, 44743452 - 44744164
Alignment:
| Q |
7 |
aaaaaggcaagaaaatataaagctatggtgaataaaaaggacaacagaagactatgaataagaaaaggggagggggtaagttgatgtcataaaccaaata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44743452 |
aaaaaggcaagaaaatataaagctatggtgaataaaaaggacaacaaaagactacgaataagaaaaggggagggggtaagttgatgtcataaaccaaata |
44743551 |
T |
|
| Q |
107 |
ctctgcaaataaatcgagtgatcattccatggcagataaattatccttttcagccagcaataagtaatcatttcaaacttaaaactagacacaagaaaac |
206 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44743552 |
ctctgcaaataaattgagtgatcattccatggcagataaattatccttttcagccagcaataagtaatcatttcaaacttaaaactagacacaagaaaac |
44743651 |
T |
|
| Q |
207 |
attaccatactctcataacactatcacataaaatttaaaagatacatgggtaactaatcaaggaagtgaataacaggcaaacagcagaaaatcataagct |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44743652 |
attaccatactctcataacactatcacataaaatctaaaagatacatgggtaactaatcaaggaagtgaataacaggcaaacagcagaaaatcataagct |
44743751 |
T |
|
| Q |
307 |
atattgctcagaattgaaacaagcatatacacacacctgagcattggcttccaaagtgagattgtcaaacacatcgtacttgactcttgcagttactctt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44743752 |
atattgctcagaattgaaacaagcatatacacacacctgagcattagctttcaaagtgagattgtcaaacacatcatacttgactcttgcagttactctt |
44743851 |
T |
|
| Q |
407 |
ccatcagtcatagctctccccaaaagcaacagctgcaaaacatcaccatggtcaaataatgcattattatagtgttaaagcctccataaaattgacactt |
506 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44743852 |
ccatcagtcatagctcttcccaaaagcaacagctgcaaaacatcaccatggtcaaataatgcattattatagtgttaaaacctccataaaattgacactt |
44743951 |
T |
|
| Q |
507 |
tgaattgaaagtgtgtctggtgtccgacgtgtgtcagtttccaacaccgacacaacaatgacacaattgattagttcaattatgtcgttttcttaaaata |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
44743952 |
cgaattgaaagtgtgtctggtgtccgacgtgtgtcagtttccaacaccgacacaacaatgacaaaagtgattagttcaattatgtcattttcttaaaata |
44744051 |
T |
|
| Q |
607 |
aaatattaccagtatacatgtcagaaaccactgtaccaccgacatttctgacaactgtaccacggacatttctgattgaagatgtgtctggtgacagtga |
706 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44744052 |
aaatattactagtatacatgtcagaaaccactgtaccaccgacatttctgacaactgtaccacggacatttctgattgaagatgtgtctagtgacagtga |
44744151 |
T |
|
| Q |
707 |
cagtgactgacac |
719 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44744152 |
cagtgactgacac |
44744164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Original strand, 44760753 - 44761241
Alignment:
| Q |
7 |
aaaaaggcaagaaaatataaagctatggtgaataaaaaggacaacag---aagactatgaataagaaaaggggagggggtaagttgatgtcataaaccaa |
103 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| ||||| ||| ||||| ||||||||||||||||||||| ||| |
|
|
| T |
44760753 |
aaaaaggcaagaaaatatgaagttatggtgaataaaaaggacaacaacaaaagactacaaataacaaa-ggggaaggggtaagttgatgtcataaaacaa |
44760851 |
T |
|
| Q |
104 |
atactctgcaaataaatcgagtgatcattccatggcagataaattatccttttcagccagcaataagtaat--catttcaaacttaaaactagacacaag |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44760852 |
atactctgcaaataaattgagtgatcattccatggcagataaattatccttttcagccagcaataagtaatatcatttcaaacttaaaactagacacaag |
44760951 |
T |
|
| Q |
202 |
aaaacattaccatactctcataacactatcacataaaatttaaaagatacatgggtaactaatcaaggaagtgaataacaggcaaacagcagaaaatcat |
301 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
44760952 |
aaaacagtaccatactctcataacactatcaaataaaatctaaaagatacattggtaactaatcaaggaagtaga-aacaggcaaacagcagaaaatcat |
44761050 |
T |
|
| Q |
302 |
aagctatattgctcagaattgaaacaagcatatacacacacctgagcattggcttccaaagtgagattgtcaaacacatcgtacttgactcttgcagtta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44761051 |
aagctatattgctcagaattgaaacaagcatatacacccacctgagcattggctttcaaagtgagattgtcaaacacatcatacttgactcttgcagtta |
44761150 |
T |
|
| Q |
402 |
ctcttccatcagtcatagctctccccaaaagcaacagctgcaaaacatcaccatggtcaaataatgcattattatagtgttaaagcctcca |
492 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
44761151 |
cccttccatcagtcatagctctccccaaaagcaacagctgcaaaacatcaacatggtcaaagaatgcattattatagtattaaaacctcca |
44761241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 44765997 - 44766051
Alignment:
| Q |
139 |
cagataaattatccttttcagccagcaataagtaatcatttcaaacttaaaacta |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44765997 |
cagataaattatccttttcagccagcaataagtaatcatttcaaacttaaaacta |
44766051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 708 - 760
Target Start/End: Original strand, 44744181 - 44744233
Alignment:
| Q |
708 |
agtgactgacacgtgtcaacgacacatgtaattacatagcaatgtgtcttgtc |
760 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44744181 |
agtgactgacacatgtcaacgacacatgtaattacatagcaatgtgtcttgtc |
44744233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 44765918 - 44765963
Alignment:
| Q |
7 |
aaaaaggcaagaaaatataaagctatggtgaataaaaaggacaaca |
52 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44765918 |
aaaaaggcaagaaaataagaagctatggtgaataaaaaggacaaca |
44765963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University