View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981-Insertion-8 (Length: 721)

Name: NF4981-Insertion-8
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981-Insertion-8
NF4981-Insertion-8
[»] chr6 (7 HSPs)
chr6 (8-294)||(5723833-5724124)
chr6 (214-294)||(5723171-5723251)
chr6 (476-550)||(4349890-4349964)
chr6 (476-550)||(4350129-4350203)
chr6 (500-549)||(7271843-7271892)
chr6 (117-191)||(5723274-5723352)
chr6 (485-542)||(14333978-14334034)
[»] chr3 (9 HSPs)
chr3 (8-294)||(33293777-33294067)
chr3 (8-294)||(32838714-32839004)
chr3 (214-294)||(33294652-33294732)
chr3 (470-548)||(43790665-43790743)
chr3 (475-551)||(9107062-9107138)
chr3 (499-551)||(46786688-46786740)
chr3 (481-551)||(1543204-1543274)
chr3 (118-191)||(32838152-32838229)
chr3 (118-191)||(33294552-33294629)
[»] chr5 (6 HSPs)
chr5 (566-658)||(40756449-40756540)
chr5 (650-719)||(40756950-40757019)
chr5 (351-417)||(3375300-3375366)
chr5 (481-551)||(23127184-23127259)
chr5 (356-417)||(3400368-3400429)
chr5 (487-549)||(36226680-36226742)
[»] chr1 (8 HSPs)
chr1 (368-536)||(42312816-42312984)
chr1 (496-551)||(34454149-34454204)
chr1 (500-549)||(35938541-35938590)
chr1 (484-549)||(7230413-7230478)
chr1 (350-415)||(44061512-44061577)
chr1 (500-551)||(27664109-27664160)
chr1 (481-551)||(50878600-50878675)
chr1 (487-548)||(23165940-23166001)
[»] chr4 (8 HSPs)
chr4 (16-109)||(37091377-37091470)
chr4 (476-548)||(41668859-41668931)
chr4 (496-551)||(19936300-19936355)
chr4 (470-549)||(7372657-7372736)
chr4 (475-549)||(53423281-53423355)
chr4 (483-551)||(40303478-40303546)
chr4 (476-551)||(21124591-21124666)
chr4 (476-551)||(21144681-21144756)
[»] chr8 (4 HSPs)
chr8 (476-551)||(32236997-32237072)
chr8 (386-549)||(154578-154746)
chr8 (481-550)||(9315398-9315467)
chr8 (470-551)||(2296688-2296769)
[»] chr7 (8 HSPs)
chr7 (368-437)||(3412235-3412304)
chr7 (470-551)||(3412121-3412201)
chr7 (476-549)||(27746614-27746687)
chr7 (368-438)||(31723886-31723956)
chr7 (481-551)||(37808031-37808101)
chr7 (470-551)||(20246661-20246742)
chr7 (476-541)||(30275289-30275354)
chr7 (368-417)||(36684035-36684084)
[»] chr2 (7 HSPs)
chr2 (349-432)||(14994609-14994691)
chr2 (368-551)||(14902268-14902450)
chr2 (481-544)||(24026726-24026789)
chr2 (483-551)||(35664557-35664625)
chr2 (368-444)||(36184437-36184512)
chr2 (485-551)||(6584307-6584374)
chr2 (370-420)||(12363987-12364037)


Alignment Details
Target: chr6 (Bit Score: 170; Significance: 7e-91; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 5723833 - 5724124
Alignment:
Q  8 catatgttgtttagtgtttacttcaatgcttctgtacactcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagattct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5723833 catatgttgtttagtgtttacttcaatgcttctgtacactcaaaagagacaaatatcttcaattttgctagctatatcagttttatatggaatagattct 5723932  T
Q  108 catttaaaatggcttttgggttgaagaggta-----gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggcnnnnnnnnnnn 202  Q
    ||||||||||||||||||||||||||||| |     |||| |||||||||||||||||||||| |||||||||||||||||||||||||               
T  5723933 catttaaaatggcttttgggttgaagaggcaagggagaaacaaggagaaaagcttataccgtgtttggctctttttcacttaaaatggctttttgttttt 5724032  T
Q  203 nnnnnnnnnnnaatgactatatgccatgtgtcagcctctgattagtaatgtcaccataccattagtttctcaatggcactgaagtgccaccc 294  Q
               ||||||||| |||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5724033 tgttttattttaatgactatgtgccacatgtcagcctctgattggtaatgtcaccataccattagtttttcaatggcactgaagtgccaccc 5724124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 5723251 - 5723171
Alignment:
Q  214 aatgactatatgccatgtgtcagcctctgattagtaatgtcaccataccattagtttctcaatggcactgaagtgccaccc 294  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  5723251 aatgactatgtgccatgtgtcagcctctgattggtaatgtcaccataccattagtttttcaatggcactgaagtgccaccc 5723171  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 4349964 - 4349890
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacg 550  Q
    |||| |||||||||||||| | |||||| || ||||||||  |||||| ||||||||||||||||||||||||||    
T  4349964 tttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4349890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 550
Target Start/End: Complemental strand, 4350203 - 4350129
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacg 550  Q
    |||| |||||||||||||| | |||||| || ||||||||  |||||| ||||||||||||||||||||||||||    
T  4350203 tttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaacg 4350129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 7271843 - 7271892
Alignment:
Q  500 gttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    |||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  7271843 gttaggatccaaattgtagattcgtcctatgccaccaaaatctcataaac 7271892  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 5723352 - 5723274
Alignment:
Q  117 tggcttttgggttgaagaggta-----gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggc 191  Q
    |||||||||||||||||||| |     |||||||||||||| |||||||||  | |||| ||||||||||||||||||||    
T  5723352 tggcttttgggttgaagaggcaagggagaaagaaggagaaa-gcttatacctcgtttggttctttttcacttaaaatggc 5723274  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 542
Target Start/End: Original strand, 14333978 - 14334034
Alignment:
Q  485 tatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatct 542  Q
    |||||||||  ||||||||||| |||||||| ||||||| |||| |||||||||||||    
T  14333978 tatatatatatattagttaggacccaaattgtaggttcgcccta-gccaccaaaatct 14334034  T

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Target: chr3 (Bit Score: 155; Significance: 7e-82; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 8 - 294
Target Start/End: Complemental strand, 33294067 - 33293777
Alignment:
Q  8 catatgttgtttagtgtttacttcaatgcttctgtacac--tcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagatt 105  Q
    |||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33294067 catatgttgtttagtgtttacttcaatgcttctgcacacactcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagatt 33293968  T
Q  106 ctcatttaaaatggcttttgggttgaagaggta--gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggcnnnnnnnnnnnn 203  Q
    |||||||||||||  ||||||||||||||||||  | |  |||||||||||||||||||||| ||| ||||||||||||||||||| |                
T  33293967 ctcatttaaaatgatttttgggttgaagaggtaagggagaaaggagaaaagcttataccgtgtttgactctttttcacttaaaatgactttttgtttttt 33293868  T
Q  204 nnnnnnnnnnaatgactatatgccatgtgtcagcctctgattagtaatgtcaccataccattagtttctcaatggcactgaagtgccaccc 294  Q
              ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  33293867 gttttattttaatgactatgtgccatgtgtcagcctctgattggtaatgtcaccataccattagtttttcaatggcactgaagtgccaccc 33293777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 294
Target Start/End: Original strand, 32838714 - 32839004
Alignment:
Q  8 catatgttgtttagtgtttacttcaatgcttctgtacac--tcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagatt 105  Q
    |||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32838714 catatgttgtttagtgtttacttcaatgcttctgcacacactcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagatt 32838813  T
Q  106 ctcatttaaaatggcttttgggttgaagaggta--gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggcnnnnnnnnnnnn 203  Q
    |||||||||||||  |||||||||||||||| |  | |  |||||||||||||||||||||| ||| ||||||||||||||||||| |                
T  32838814 ctcatttaaaatgatttttgggttgaagaggcaagggagaaaggagaaaagcttataccgtgtttgactctttttcacttaaaatgactttttgtttttt 32838913  T
Q  204 nnnnnnnnnnaatgactatatgccatgtgtcagcctctgattagtaatgtcaccataccattagtttctcaatggcactgaagtgccaccc 294  Q
              ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  32838914 gttttattttaatgactatgtgccatgtgtcagcctctgattggtaatgtcaccataccattagtttttcaatggcactgaagtgccaccc 32839004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 214 - 294
Target Start/End: Original strand, 33294652 - 33294732
Alignment:
Q  214 aatgactatatgccatgtgtcagcctctgattagtaatgtcaccataccattagtttctcaatggcactgaagtgccaccc 294  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  33294652 aatgactatgtgccacatgtcagcctctgattggtaatgtcaccataccattagtttttcaatggcactgaagtgccaccc 33294732  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 470 - 548
Target Start/End: Original strand, 43790665 - 43790743
Alignment:
Q  470 atcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaa 548  Q
    |||| ||||| |||||||||||||| ||||||||||| |||||||| | ||||| |||||||||||||||||| |||||    
T  43790665 atcaaatttgatgtttatatatatttattagttaggacccaaattgtaagttcgccctaggccaccaaaatcttagaaa 43790743  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 475 - 551
Target Start/End: Complemental strand, 9107138 - 9107062
Alignment:
Q  475 atttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||| |||||||||||||| |||||||| ||||||||| | ||||||| ||||||||||||||| || ||||||||    
T  9107138 atttgatgtttatatatatttattagttatgatccaaatggtaggttcgccctaggccaccaaaaacttagaaacgg 9107062  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 499 - 551
Target Start/End: Complemental strand, 46786740 - 46786688
Alignment:
Q  499 agttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  46786740 agttaagatccaaattgtaggttcgccctaggccaccaaaatctcagaaacgg 46786688  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 1543274 - 1543204
Alignment:
Q  481 tgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||| |||||||| |||||||||||| ||||||| |||||||   ||| ||| |||||||||| ||||||    
T  1543274 tgtttttatatatttattagttaggattcaaattgtaggttcgctttagaccatcaaaatctcataaacgg 1543204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 191
Target Start/End: Complemental strand, 32838229 - 32838152
Alignment:
Q  118 ggcttttgggttgaagaggta-----gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggc 191  Q
    ||||||||||||||||||| |     |||||||||||||| |||||||||  | |||| ||||||||||||||||||||    
T  32838229 ggcttttgggttgaagaggcaagggagaaagaaggagaaa-gcttatacctcgtttggttctttttcacttaaaatggc 32838152  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 33294552 - 33294629
Alignment:
Q  118 ggcttttgggttgaagaggta-----gaaagaaggagaaaagcttataccgtgcttggctctttttcacttaaaatggc 191  Q
    ||||||||||||||||||| |     |||||||||||||| |||||||||  | |||| ||||||||||||||||||||    
T  33294552 ggcttttgggttgaagaggcaagggagaaagaaggagaaa-gcttatacctcgtttggttctttttcacttaaaatggc 33294629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 9e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 566 - 658
Target Start/End: Original strand, 40756449 - 40756540
Alignment:
Q  566 actcacacgtcaaacaagaaaaatgaaacttcttcaagaatataatagcactcaaccactaaatttaaagtcattccaaagtaattgtatata 658  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40756449 actcacacgtcaaacaagaaaaatgaaacttcttcaggaatataatagcactcaaccactaaattt-aagtcattccaaagtaattgtatata 40756540  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 650 - 719
Target Start/End: Original strand, 40756950 - 40757019
Alignment:
Q  650 ttgtatatatgcttagatattatattctaggcgtggattctatgcttcgtatcttgaacttaccatatat 719  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40756950 ttgtatatatgcttagatattatattctaggcgtggattttatgcttcgtatcttgaacttaccatatat 40757019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 3375300 - 3375366
Alignment:
Q  351 agggccgtatctgaggcagggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaa 417  Q
    |||| ||||||| |||||||||||||| |||||  |||||||||||||| || ||||||||||||||    
T  3375300 agggtcgtatcttaggcagggcgaccgtcctaggccccaaaaaataagtacgaaatttgggccccaa 3375366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 23127259 - 23127184
Alignment:
Q  481 tgtttatatatattcatta-----gttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||||||||||||| ||||     |||||||||||||||| || |||| ||| |||||||||||||||||||||||    
T  23127259 tgtttatatatatttattagttaggttaggatccaaattgtagattcgcccttggccaccaaaatctcagaaacgg 23127184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 3400368 - 3400429
Alignment:
Q  356 cgtatctgaggcagggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaa 417  Q
    ||||||| |||||||||||||  |||||  |||||||||||||| || ||||||||||||||    
T  3400368 cgtatcttaggcagggcgaccatcctaggccccaaaaaataagtacgaaatttgggccccaa 3400429  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 36226680 - 36226742
Alignment:
Q  487 tatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    |||||| |||||  |||| ||| |||||| ||||||||  |||||||||||||||||||||||    
T  36226680 tatataatcattgtttagaatctaaattgtaggttcgttttaggccaccaaaatctcagaaac 36226742  T

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Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 368 - 536
Target Start/End: Original strand, 42312816 - 42312984
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtctataaaaccttnnnnnnnttgtttagnnnnnn 467  Q
    |||||||||| ||||| ||||||||||||  | || ||||||||||||||||||| |||||| |||||||| || || |       ||||||||          
T  42312816 agggcgaccgtcctaggtcccaaaaaatatatacgaaatttgggccccaaaatttatttttaagggtctattaagccctaaaaaaattgtttagtttttt 42312915  T
Q  468 nnatcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccacca 536  Q
      |||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||| |||||||    
T  42312916 gaatcagatttgatgtttatatatatttattagtcaggatccaaattgcaggttcgccctaagccacca 42312984  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 551
Target Start/End: Original strand, 34454149 - 34454204
Alignment:
Q  496 attagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||    
T  34454149 attagttaggacccaaattgtaggttcgccctaggccaccaaaatctcagaaacgg 34454204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 35938541 - 35938590
Alignment:
Q  500 gttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  35938541 gttaggatccaaattgtaggttcttcctaggccaccaaaatctcagaaac 35938590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 7230413 - 7230478
Alignment:
Q  484 ttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    ||||||||||| ||||||||| || ||||||| ||||||||||||  |||||||||||| ||||||    
T  7230413 ttatatatatttattagttagaattcaaattgtaggttcgtcctataccaccaaaatcttagaaac 7230478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 415
Target Start/End: Complemental strand, 44061577 - 44061512
Alignment:
Q  350 cagggccgtatctgaggcagggcgaccgccctagatcccaaaaaataagttcggaatttgggcccc 415  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||||| |  ||||||||||||    
T  44061577 cagggccgtatctgaggcaaggcgaccgccctaagccccaaaaaataagtacaaaatttgggcccc 44061512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 500 - 551
Target Start/End: Original strand, 27664109 - 27664160
Alignment:
Q  500 gttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||||| |||||||| ||||||  |||||||||||||||||||||||||||    
T  27664109 gttaggacccaaattgtaggttctccctaggccaccaaaatctcagaaacgg 27664160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 50878675 - 50878600
Alignment:
Q  481 tgtttatatatattcattagttag-----gatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||||||||| || |||||||||     ||||||||||| ||||||||||||| |||||||||||||| ||||||    
T  50878675 tgtttatatatttttattagttaggttatgatccaaattgtaggttcgtcctagaccaccaaaatctcaaaaacgg 50878600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 548
Target Start/End: Original strand, 23165940 - 23166001
Alignment:
Q  487 tatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaa 548  Q
    |||||||| |||| |||||||  |||||  ||||||| ||||| ||||||||||||||||||    
T  23165940 tatatatttattaattaggatttaaattataggttcgccctagaccaccaaaatctcagaaa 23166001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 37091470 - 37091377
Alignment:
Q  16 gtttagtgtttacttcaatgcttctgtacactcaaaagagacaaatatcttcaattttgctagccatatcagttttatatggaatagattctca 109  Q
    |||||| | |||||||||||||||||| |||| ||||||||||| ||||||||| |||| |||||||||||||||||| |||||| || |||||    
T  37091470 gtttagggcttacttcaatgcttctgtgcactgaaaagagacaactatcttcaactttgttagccatatcagttttatgtggaatggactctca 37091377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 476 - 548
Target Start/End: Complemental strand, 41668931 - 41668859
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaa 548  Q
    |||| |||||||||||||| ||||||||||| |||||||  ||||||| ||||||||||||||||||||||||    
T  41668931 tttgatgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctcagaaa 41668859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 496 - 551
Target Start/End: Original strand, 19936300 - 19936355
Alignment:
Q  496 attagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||    
T  19936300 attagttaggacccaaattgtaggttcgtcctagaccaccaaaatctcagaaacgg 19936355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 549
Target Start/End: Original strand, 7372657 - 7372736
Alignment:
Q  470 atcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    |||| ||||| |||||||||||||| |||||||| ||||||||||| ||||||| |||| ||||   |||||||||||||    
T  7372657 atcaaatttgatgtttatatatatttattagttaagatccaaattgtaggttcgccctaagccattgaaatctcagaaac 7372736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 475 - 549
Target Start/End: Original strand, 53423281 - 53423355
Alignment:
Q  475 atttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    ||||| |||||||||||||| ||||||||||| | |||||| |||||| |||||  |||||||||||||| ||||    
T  53423281 atttgatgtttatatatatttattagttaggacctaaattgtaggttcatcctataccaccaaaatctcataaac 53423355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 551
Target Start/End: Complemental strand, 40303546 - 40303478
Alignment:
Q  483 tttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||||||||||| |||||||||| ||||||||| | ||||   |||||| |||||||||||||||||||    
T  40303546 tttatatatatttattagttagggtccaaattgtaagttcactctaggcaaccaaaatctcagaaacgg 40303478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 21124591 - 21124666
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||| |||||||||||||| ||||||||  || ||||||| ||||| ||||| | |||| ||||| ||||||||||    
T  21124591 tttgatgtttatatatatttattagttaaaattcaaattgtaggtttgtcctggaccactaaaatatcagaaacgg 21124666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 21144681 - 21144756
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||| |||||||||||||| ||||||||  || ||||||| ||||| ||||| | |||| ||||| ||||||||||    
T  21144681 tttgatgtttatatatatttattagttaaaattcaaattgtaggtttgtcctggaccactaaaatatcagaaacgg 21144756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 476 - 551
Target Start/End: Original strand, 32236997 - 32237072
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||| |||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||| |||||||||||||    
T  32236997 tttgatgtttatatatatttattagttaggacccaaattgtaggttcgtcttaggccaccaatatctcagaaacgg 32237072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 386 - 549
Target Start/End: Original strand, 154578 - 154746
Alignment:
Q  386 cccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtctataaaaccttnnnnnnnttgtttagnnnnnnnnatcagatttgttgttt 485  Q
    |||||||||||||| || |||||||||| |||||||||||||||||| ||||| | ||| |       ||||||||        ||||| |||| || ||    
T  154578 cccaaaaaataagtacgaaatttgggcctcaaaatttctttttagggatctattagaccctaaaaaaattgtttagttttttgaatcaggtttgatgatt 154677  T
Q  486 atatatattcattagttaggatccaaattgcaggttcgtcctagg-----ccaccaaaatctcagaaac 549  Q
    ||||||||| |||||||||||||||||||||| |||| | |||||     |||||||||||||||||||    
T  154678 atatatatttattagttaggatccaaattgcaagttctttctaggctagaccaccaaaatctcagaaac 154746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 481 - 550
Target Start/End: Complemental strand, 9315467 - 9315398
Alignment:
Q  481 tgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacg 550  Q
    |||||||||||||| ||||||||| |||||||| |   ||||||| ||| |||||||||||||| |||||    
T  9315467 tgtttatatatatttattagttagtatccaaatcgtcagttcgtcttagaccaccaaaatctcataaacg 9315398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 551
Target Start/End: Original strand, 2296688 - 2296769
Alignment:
Q  470 atcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||| ||||| |||||||||||||| |||| |||||||| ||| |  | ||||||||||  ||| |||||| ||||||||||    
T  2296688 atcaaatttgatgtttatatatatttattaattaggatctaaaatataagttcgtcctaaaccatcaaaatatcagaaacgg 2296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 368 - 437
Target Start/End: Complemental strand, 3412304 - 3412235
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtcta 437  Q
    |||||||||| ||||| | ||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  3412304 agggcgaccgtcctaggttccaaaaaataagtacagaatttgggccccaaaatttctttttaggggtcta 3412235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 470 - 551
Target Start/End: Complemental strand, 3412201 - 3412121
Alignment:
Q  470 atcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||| |||| |||||||||||||| ||| ||||| | |||||||||||||||||||||| ||| |||||||||||||||||    
T  3412201 atcaggtttgatgtttatatatatttatttgttagaacccaaattgcaggttcgtcctagacca-caaaatctcagaaacgg 3412121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 549
Target Start/End: Complemental strand, 27746687 - 27746614
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaac 549  Q
    |||| |||||||||||||| ||||||||| |  ||||||  || |||  |||||||||||||||||||||||||    
T  27746687 tttgatgtttatatatatttattagttagcactcaaattatagattcaccctaggccaccaaaatctcagaaac 27746614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 368 - 438
Target Start/End: Original strand, 31723886 - 31723956
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtctat 438  Q
    ||||||||||  ||||  |||||||||||||| |  |||||||||||||||  || |||||||||||||||    
T  31723886 agggcgaccgttctaggccccaaaaaataagtacaaaatttgggccccaaatgttttttttaggggtctat 31723956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 37808101 - 37808031
Alignment:
Q  481 tgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||||||||||||| ||||||||||| | |||||  ||| ||| ||||  |||||||||||||| ||||||    
T  37808101 tgtttatatatatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaacgg 37808031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 551
Target Start/End: Complemental strand, 20246742 - 20246661
Alignment:
Q  470 atcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    |||| ||||| ||||||||||| || |||||||| || | |||||  ||||||  | |||||||||||||||||| ||||||    
T  20246742 atcaaatttgatgtttatatatgtttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaacgg 20246661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 30275354 - 30275289
Alignment:
Q  476 tttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatc 541  Q
    |||| |||||||||||||| ||||||||| |||||||||| || |||| || || |||| ||||||    
T  30275354 tttgatgtttatatatatttattagttagaatccaaattgtagattcgccccagaccactaaaatc 30275289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 36684084 - 36684035
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaa 417  Q
    ||||| ||||||||||||||||||||||||||  | ||||| ||||||||    
T  36684084 agggcaaccgccctagatcccaaaaaataagtatgaaatttaggccccaa 36684035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 432
Target Start/End: Original strand, 14994609 - 14994691
Alignment:
Q  349 ccagggccgtatctgaggcagggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggg 432  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||| |  |||||||| |||| ||||| |||||||||    
T  14994609 ccagggccgtatctgaggcagggcgaccgccctaggcccgaaaaaataagtacaaaatttggg-cccacaatttttttttaggg 14994691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 551
Target Start/End: Complemental strand, 14902450 - 14902268
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtctataaaaccttnnnnnnnttgtttagnnnnnn 467  Q
    |||||||||||||||| ||||||||||||| | ||  |||||||| ||||| |||  |||||||||||||| | ||| |       ||| ||||          
T  14902450 agggcgaccgccctaggtcccaaaaaataattacgatatttgggctccaaatttttcttttaggggtctattagaccctaacaaaattgcttag-ttttt 14902352  T
Q  468 nnatcagatttgttgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
      |||| ||||| |||||||||||||| ||||||||||| |||||||| | ||||| | ||| |||||||||||| ||||||||    
T  14902351 gtatcaaatttgatgtttatatatatttattagttaggacccaaattgtatgttcgccatagaccaccaaaatcttagaaacgg 14902268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 481 - 544
Target Start/End: Original strand, 24026726 - 24026789
Alignment:
Q  481 tgtttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctca 544  Q
    |||||||||||||| |||||||| |||| |||||| ||||||| ||||| ||||||||||||||    
T  24026726 tgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctca 24026789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 551
Target Start/End: Original strand, 35664557 - 35664625
Alignment:
Q  483 tttatatatattcattagttaggatccaaattgcaggttcgtcctaggccaccaaaatctcagaaacgg 551  Q
    ||||||||  || ||||||||||||||||| || ||||||| ||||| |||||||||||||| ||||||    
T  35664557 tttatataggtttattagttaggatccaaaatgtaggttcgccctagaccaccaaaatctcaaaaacgg 35664625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 36184512 - 36184437
Alignment:
Q  368 agggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaatttctttttaggggtctataaaacc 444  Q
    ||||||||||||||||| |||||||||||||| |  ||||||| || | |||||| ||||||||||||||| |||||    
T  36184512 agggcgaccgccctagaccccaaaaaataagtacaaaatttggacctccaaattt-tttttaggggtctattaaacc 36184437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 485 - 551
Target Start/End: Original strand, 6584307 - 6584374
Alignment:
Q  485 tatatatattcattagttaggatccaaattgcaggttcgtcc-taggccaccaaaatctcagaaacgg 551  Q
    ||||||||||||||| |||||| |||||||| ||||||| ||  || |||||||||||||||||||||    
T  6584307 tatatatattcattaattaggacccaaattgtaggttcgcccaaagaccaccaaaatctcagaaacgg 6584374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 12363987 - 12364037
Alignment:
Q  370 ggcgaccgccctagatcccaaaaaataagttcggaatttgggccccaaaat 420  Q
    |||||||| |||||| |||||||||||||||   |||||||||||||||||    
T  12363987 ggcgaccgtcctagaccccaaaaaataagtttataatttgggccccaaaat 12364037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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