View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4981-Insertion-9 (Length: 718)
Name: NF4981-Insertion-9
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981-Insertion-9 |
 | |
|
| [»] chr7 (14 HSPs) |
| |
|
| [»] scaffold0522 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
| [»] scaffold0137 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 214 - 718
Target Start/End: Complemental strand, 46512246 - 46511741
Alignment:
| Q |
214 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacc |
313 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46512246 |
caggatgcacaacgcgtatgattatttcacttgatcgaaagatagggaaatataagtttgttgactttgaagctcaacataaccaccttcttcttccacc |
46512147 |
T |
|
| Q |
314 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattgagcatgagtatttaggtgcctgcactgttatattctat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46512146 |
tgagtatgttcatatgattcgctcccatcgacacatatttgaggcacaagcatcacaaattgagcatgagtgtttaggtgcctgcactgttatattctat |
46512047 |
T |
|
| Q |
414 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtgaaggtgtaattatctttgagcatgtaatgaaaaaagtgata |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46512046 |
gtagcaagtttgaaagattaaaatatataccgcattactgtactttttcaagttcagtgaaggtgtaattatctttgagcatgtaatgaaaaaagtgata |
46511947 |
T |
|
| Q |
514 |
ttgtatttggatctataagtcttaattttcaagtttaatgtgtttttgagattggcactgtaagacattgtatttgcaaactttcaataatgatggatct |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46511946 |
ttgtatttggatctataagtcttaattttcaagtttaatgtgtttttgagattggcactgtatgacattgtatttgcaaactttcaataatgatggatct |
46511847 |
T |
|
| Q |
614 |
acgacatggctcatctgctagacaattgtgctagagttttatattgataaattttc-nnnnnnnnnnntgattaaggagagatcgccttattgaatttat |
712 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46511846 |
acgacatggctcatctgctagataattgtgctagagttttatattgataaattttcaaaaaaaaaaaatgattaaggagagatcgccttattgaatttat |
46511747 |
T |
|
| Q |
713 |
tatgga |
718 |
Q |
| |
|
|||||| |
|
|
| T |
46511746 |
tatgga |
46511741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 46517105 - 46516904
Alignment:
| Q |
8 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46517105 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
46517006 |
T |
|
| Q |
108 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcccacttcagt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
46517005 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctctgtggctacggtgacactgatgctcccacttcagt |
46516906 |
T |
|
| Q |
208 |
ta |
209 |
Q |
| |
|
|| |
|
|
| T |
46516905 |
ta |
46516904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 215 - 375
Target Start/End: Original strand, 46165564 - 46165724
Alignment:
| Q |
215 |
aggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacct |
314 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
46165564 |
aggatgcacagcgtgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacct |
46165663 |
T |
|
| Q |
315 |
gagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
46165664 |
gagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
46165724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 46524813 - 46524611
Alignment:
| Q |
7 |
acacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctgg |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || |||||||||||||| || || ||| ||||| |
|
|
| T |
46524813 |
acacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgtcttgttccttcatggcttcccagaactctgg |
46524714 |
T |
|
| Q |
107 |
tactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcccacttcag |
206 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||| || |||||||| |||||||| |||||| |
|
|
| T |
46524713 |
tattcatggcgccaccagattgtagctctcagctccctcggctaccgtgctgttgctcccgatctccgtggctatggtgacaccgatgctccgtcttcag |
46524614 |
T |
|
| Q |
207 |
tta |
209 |
Q |
| |
|
||| |
|
|
| T |
46524613 |
tta |
46524611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 46322747 - 46322937
Alignment:
| Q |
8 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| |||||| |
|
|
| T |
46322747 |
cacagaagagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggt |
46322846 |
T |
|
| Q |
108 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcc |
198 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| || ||||||||| |||| ||||| ||||| ||||| || ||||||||||| ||||| |
|
|
| T |
46322847 |
actcttggcgccaccagattgcggctctcggctctctcggctaccgcgccgtagctccggatctacgtggctatggtgacactgaggctcc |
46322937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 46479317 - 46479119
Alignment:
| Q |
7 |
acacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctgg |
106 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||| |
|
|
| T |
46479317 |
acacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctgg |
46479218 |
T |
|
| Q |
107 |
tactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcccacttca |
205 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
46479217 |
tattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46479119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 46520747 - 46520549
Alignment:
| Q |
7 |
acacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctgg |
106 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| | |||||||||||||||||||| ||| | || ||||||||||| || || |||||| ||||| |
|
|
| T |
46520747 |
acacagaacggtggaagtgaatggcatcaaaatgcatattgcagagaaaggaaaagaaggtccagttgttttgttccttcacggcttccctgaactctgg |
46520648 |
T |
|
| Q |
107 |
tactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcccacttca |
205 |
Q |
| |
|
|| ||||||||||||||||||| |||||| ||||||| || ||||| | || ||||||||||| ||||| ||||| ||||| ||||||||| ||||| |
|
|
| T |
46520647 |
tattcatggcgccaccagattgctgctcttggctccctcggttaccgtgctgttgctccagatcttcgtggctacggcgacaccgatgctcccgcttca |
46520549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 46490519 - 46490328
Alignment:
| Q |
7 |
acacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctgg |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| | || |||||||| ||||||||||| | || ||||||||||||| || |||||| ||||| |
|
|
| T |
46490519 |
acacagaacagtggaagtgaatggcatcaaaatgcatattgctgagaaaggtaaagaaggacccgttgtcctgttccttcatggcttccctgaactctgg |
46490420 |
T |
|
| Q |
107 |
tactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcc |
198 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||| || |||||| | || |||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
46490419 |
tattcatggcgccaccagatttctgctcttggctccctcggttaccgcgctgttgctccagatctccgtggttatggcgacaccgatgctcc |
46490328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 46532366 - 46532175
Alignment:
| Q |
7 |
acacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctgg |
106 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||||||| || || ||| ||||| |
|
|
| T |
46532366 |
acacagaacagtggaggtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcttgttccttcatggcttcccagaactctgg |
46532267 |
T |
|
| Q |
107 |
tactcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcc |
198 |
Q |
| |
|
|| |||||||||||||| ||||| ||||| ||||||| || |||||| |||| ||||||||||| ||||| || |||||||| || ||||| |
|
|
| T |
46532266 |
tattcatggcgccaccaaattgtagctcttggctccctcggttaccgcgccgttgctccagatctgcgtggctatggtgacaccgaggctcc |
46532175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 46326455 - 46326638
Alignment:
| Q |
11 |
agaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggtact |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||| | || ||||||||||| || ||||||||| ||||||||| |
|
|
| T |
46326455 |
agaacagtggaagtgaatggaatcaaaatgcatattgctgagaaaggtaaagaaggacctgttgttttgttccttcacggctttcctgaactctggtact |
46326554 |
T |
|
| Q |
111 |
catggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatg |
194 |
Q |
| |
|
| |||||||||||||||| |||||| | ||||| || ||||| | || ||||| ||||||||||| || |||||||| |||| |
|
|
| T |
46326555 |
cttggcgccaccagattgcggctctcggatccctcggttaccgtgctgttgctcccgatctccgtggctatggtgacacagatg |
46326638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 8 - 194
Target Start/End: Complemental strand, 46494816 - 46494630
Alignment:
| Q |
8 |
cacagaacagtggaagtgaatggaatcaaaatgcatgtcgcagagaaaggaaaagaaggaccaatagtattgttccttcatggttttcctgaaatctggt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||| | || |||||||||| || || |||||| |||||| |
|
|
| T |
46494816 |
cacagaacagtggaagtgaatggaatcaaaatgcatattgctgaaaaaggaaaagaaggacctgttgtcctgttccttcacggattccctgaactctggt |
46494717 |
T |
|
| Q |
108 |
actcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatg |
194 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| || || ||||| | |||||||| ||||| |||||||| || || ||||||| |
|
|
| T |
46494716 |
actcttggcgccaccagattgcggctctcggctctctcggttaccgggctgtggctcccgatcttcgtggttatggcgatactgatg |
46494630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 28214902 - 28214756
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
28214902 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
28214803 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
374 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
28214802 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
28214756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 5959956 - 5959810
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttca |
325 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
5959956 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
5959860 |
T |
|
| Q |
326 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5959859 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
5959810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 229 - 375
Target Start/End: Original strand, 4127828 - 4127971
Alignment:
| Q |
229 |
gtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcatat |
328 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| ||||||| |||||||||| |
|
|
| T |
4127828 |
gtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttcatat |
4127924 |
T |
|
| Q |
329 |
gattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4127925 |
gattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
4127971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 9e-72; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 48987147 - 48987308
Alignment:
| Q |
214 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacc |
313 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
48987147 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaatctcaacataaccaccttctggttccacc |
48987246 |
T |
|
| Q |
314 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
48987247 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcacaaattg |
48987308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 214 - 375
Target Start/End: Original strand, 19870612 - 19870773
Alignment:
| Q |
214 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacc |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
19870612 |
caggatgcacaacacgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaagctcaacataaccaccttctggttccacc |
19870711 |
T |
|
| Q |
314 |
tgagtatgttcatatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
19870712 |
tgagtatgttcatatgattcgctcccatcgacacatatctgaggcacaagcatcaaaaattg |
19870773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 261 - 375
Target Start/End: Original strand, 25488280 - 25488394
Alignment:
| Q |
261 |
aaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcatatgattcgctcccatcgacacatatctgatgaac |
360 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
25488280 |
aaatataaggttgttgactttgaagctcaacataaccaccttctggttccacctgagtatgttcatatgattcgctcccatcgacacatatctgaggcac |
25488379 |
T |
|
| Q |
361 |
aagcatcacaaattg |
375 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25488380 |
aagcatcacaaattg |
25488394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 228 - 374
Target Start/End: Complemental strand, 8146296 - 8146150
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
8146296 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
8146197 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
374 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
8146196 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
8146150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 25487826 - 25487778
Alignment:
| Q |
214 |
caggatgcacaacgcgtatggttatttcacttgatcgaaagatagggaa |
262 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25487826 |
caggatgcacagcgcgtatggttatttcacttgatcgaaagatagggaa |
25487778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 228 - 374
Target Start/End: Original strand, 5632 - 5778
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||| | |||| ||||||||||||| || | ||||||||||| | |
|
|
| T |
5632 |
cgtatgggtatttcacttgatcgaaagatagggaaatacaaggttgttgactttgtactagaacacaaccaccttcttcaaccgcaagagtatgttcaca |
5731 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaatt |
374 |
Q |
| |
|
|||||||||| ||||| | ||||||||| | |||||||||||||||| |
|
|
| T |
5732 |
tgattcgctctcatcgtcgcatatctgaggtacaagcatcacaaatt |
5778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 226 - 375
Target Start/End: Complemental strand, 14297 - 14151
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttca |
325 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
14297 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccacgaacttca---acctgagcatgttca |
14201 |
T |
|
| Q |
326 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
14200 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
14151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 6827665 - 6827811
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttca |
325 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
6827665 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagcttaacataaccacgaacttca---acctgagcatgttca |
6827761 |
T |
|
| Q |
326 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6827762 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
6827811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 17939646 - 17939792
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttca |
325 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
17939646 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacctgagcatgttca |
17939742 |
T |
|
| Q |
326 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
17939743 |
tatgattcactctcatcgacgcatatctgatacacaagcatcacaaattg |
17939792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 226 - 375
Target Start/End: Original strand, 36383408 - 36383554
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttca |
325 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||| | || ||||||||||| |||| || |||| ||||||| |
|
|
| T |
36383408 |
cgcgtatggttatttcactcgatcggaagatagagaaatataaagttgttgactttatagctgaacataaccac---gaacttcaacatgagcatgttca |
36383504 |
T |
|
| Q |
326 |
tatgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
36383505 |
tatgattcgctctcatcgacgcatatctgatacacaagcatcacaaattg |
36383554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 49573035 - 49572908
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||| | | |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
49573035 |
cgtatggttatttcacttgatcggaagattggaaaatacaaggttattgactttgtagcgggacataatcaccttcttctgccagctgagtatgtttata |
49572936 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctga |
355 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |
|
|
| T |
49572935 |
tgattcgctctcattgacacatatctga |
49572908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 3904846 - 3904973
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| | |||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
3904846 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
3904945 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctga |
355 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
3904946 |
ctcctcgctcccatcgacaaatatctga |
3904973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 7475308 - 7475396
Alignment:
| Q |
110 |
tcatggcgccaccagattgttgctctcagctcccttggctaccgcaccgtggctccagatctccgtggttacggtgacactgatgctcc |
198 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||| ||||||| | ||||||||||| || |||||||| ||| |||| |
|
|
| T |
7475308 |
tcatggcgccaccagattatagctctcagctccctcggctaccatgtcgtggctactgatctccgtggctatggtgacaccgattctcc |
7475396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 228 - 375
Target Start/End: Complemental strand, 5358515 - 5358368
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||||||||||||||| ||| ||||| || ||||| |||||| |||||| || | | |||||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
5358515 |
cgtatggttatttcacttgttcggaagattggaaaatacaaggttattgactctgtagcgagacataatcaccttcttctgccagctgagtatgtttata |
5358416 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctgatgaacaagcatcacaaattg |
375 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
5358415 |
tgatttgctctcatcgacacatatctgagtcacaagcatcccaaattg |
5358368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 228 - 355
Target Start/End: Original strand, 11701 - 11828
Alignment:
| Q |
228 |
cgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccaccttcttcttccacctgagtatgttcata |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| || || || |||||||||||||||| | |||||||||| || |||||| || || | |||| |||||| |
|
|
| T |
11701 |
cgtatggttatttcacttgatcgaaagattggtaagtacaaggttgttgactttgtagctcaacataatcatcttcttgaaccgccagggtattttcata |
11800 |
T |
|
| Q |
328 |
tgattcgctcccatcgacacatatctga |
355 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
11801 |
ctcctcgctcccatcgacaaatatctga |
11828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 29760549 - 29760623
Alignment:
| Q |
226 |
cgcgtatggttatttcacttgatcgaaagatagggaaatataaggttgttgactttgaaactcaacataaccacc |
300 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| | || |||||||||||| |
|
|
| T |
29760549 |
cgcgtatggttatttcacttgatcagaagatagagaaatataaagttgttgactttatagctgaacataaccacc |
29760623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 518 - 573
Target Start/End: Original strand, 15313750 - 15313805
Alignment:
| Q |
518 |
atttggatctataagtcttaattttcaagtttaatgtgtttttgagattggcactg |
573 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||||||||| |||||| |||||| |
|
|
| T |
15313750 |
atttggatcaataagtcttaatttggaagtttgatgtgttttggagattagcactg |
15313805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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