View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981_high_10 (Length: 320)

Name: NF4981_high_10
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981_high_10
NF4981_high_10
[»] chr6 (7 HSPs)
chr6 (1-312)||(4046149-4046460)
chr6 (157-281)||(17404197-17404321)
chr6 (157-261)||(4054742-4054846)
chr6 (55-93)||(14340954-14340992)
chr6 (62-96)||(34404316-34404350)
chr6 (56-93)||(7480265-7480302)
chr6 (55-91)||(4247235-4247271)
[»] chr2 (5 HSPs)
chr2 (61-95)||(32757626-32757660)
chr2 (54-93)||(5752750-5752789)
chr2 (55-93)||(7936922-7936960)
chr2 (55-95)||(32634223-32634263)
chr2 (63-95)||(34005865-34005897)
[»] chr1 (6 HSPs)
chr1 (55-93)||(21516254-21516292)
chr1 (53-94)||(7200991-7201032)
chr1 (61-96)||(16322720-16322755)
chr1 (55-93)||(37230-37268)
chr1 (61-95)||(44936747-44936781)
chr1 (61-94)||(14128628-14128661)
[»] chr8 (2 HSPs)
chr8 (55-95)||(41336796-41336836)
chr8 (61-91)||(44865722-44865752)
[»] chr3 (5 HSPs)
chr3 (55-95)||(24235819-24235859)
chr3 (55-91)||(34857394-34857430)
chr3 (55-93)||(37308216-37308254)
chr3 (55-93)||(50399506-50399544)
chr3 (157-225)||(45865987-45866055)
[»] chr7 (8 HSPs)
chr7 (56-91)||(22388576-22388611)
chr7 (62-93)||(29769052-29769083)
chr7 (55-93)||(657835-657873)
chr7 (55-93)||(30133932-30133970)
chr7 (55-92)||(22388055-22388092)
chr7 (55-91)||(2380226-2380262)
chr7 (61-93)||(7100774-7100806)
chr7 (55-95)||(20476750-20476790)
[»] chr5 (5 HSPs)
chr5 (55-93)||(4855594-4855632)
chr5 (55-93)||(39750020-39750058)
chr5 (55-99)||(8471984-8472028)
chr5 (55-91)||(30585330-30585366)
chr5 (55-95)||(39257537-39257577)
[»] chr4 (4 HSPs)
chr4 (64-93)||(30090138-30090167)
chr4 (61-93)||(4663859-4663891)
chr4 (52-92)||(8422985-8423025)
chr4 (53-93)||(24929374-24929414)


Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 4046149 - 4046460
Alignment:
Q  1 tctctatgagccaccatattgttgtgacaatgctctaccccggagattatctgattatgttataagcatttaattaagttgtttatccaaacaagatcaa 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  4046149 tctctatgagccaccatattgttgtgacaatgctgtaccccggagattatctgattatggtataagcatttaattaagttgtttatccaaacaggatcaa 4046248  T
Q  101 atgtccaccattcatgttgtaggaagaacgaaggagagaatctaaatccgtagagtttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacc 200  Q
    ||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046249 atgcccaccattcatgtggtagggagaacgaaggagagaatccaaatccgtagagtttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacc 4046348  T
Q  201 tacccttttctactatgtaatcaaaaagctccccagattccatatactccataataacatatatatgtcttggggtttctatcacttcataaacttgtat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||| ||||||||||||||    
T  4046349 tacccttttctactatgtaatcaaaaagctccccagattccatatactccataataacatatatattcgttagggtttctatcacctcataaacttgtat 4046448  T
Q  301 aatgtgatgatg 312  Q
    ||||||| ||||    
T  4046449 aatgtgaggatg 4046460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 17404321 - 17404197
Alignment:
Q  157 ttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacctacccttttctactatgtaatcaaaaagctccccagattccatatactccataata 256  Q
    |||||||||||| || ||  |||| ||||||||||| || | |||||||||||||||||||||||||||||| || ||||||| || ||||||||| |      
T  17404321 ttatacctgctggaagaaactgcgagcttcatcttcttgaagcctacccttttctactatgtaatcaaaaagttctccagatttcacatactccatcacc 17404222  T
Q  257 acatatatatgtcttggggtttcta 281  Q
    ||||| ||||   ||||||||||||    
T  17404221 acataaatatcagttggggtttcta 17404197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 261
Target Start/End: Original strand, 4054742 - 4054846
Alignment:
Q  157 ttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacctacccttttctactatgtaatcaaaaagctccccagattccatatactccataata 256  Q
    |||||||||||| || ||  |||| ||||||||||| || | ||||||||||||||| ||||||||||| ||||| || |||| || ||||||||| | |    
T  4054742 ttatacctgctggaagaaactgcgggcttcatcttcttgtagcctacccttttctacaatgtaatcaaagagctctccggatttcacatactccatcaca 4054841  T
Q  257 acata 261  Q
    |||||    
T  4054842 acata 4054846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 14340954 - 14340992
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14340954 ttatgttataagcacttaattaagttgtttatccaaaca 14340992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 34404350 - 34404316
Alignment:
Q  62 ataagcatttaattaagttgtttatccaaacaaga 96  Q
    ||||||| |||||||||||||||||||||||||||    
T  34404350 ataagcacttaattaagttgtttatccaaacaaga 34404316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 7480265 - 7480302
Alignment:
Q  56 tatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||| |||| |||||||||||||||||||    
T  7480265 tatgttataagcacttaactaagttgtttatccaaaca 7480302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 4247235 - 4247271
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaa 91  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  4247235 ttatgctataagcacttaattaagttgtttatccaaa 4247271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 32757626 - 32757660
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaacaag 95  Q
    |||||||||||||||||||||||||||||||||||    
T  32757626 tataagcatttaattaagttgtttatccaaacaag 32757660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 5752750 - 5752789
Alignment:
Q  54 attatgttataagcatttaattaagttgtttatccaaaca 93  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  5752750 attatgctataagcagttaattaagttgtttatccaaaca 5752789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 7936960 - 7936922
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  7936960 ttatgttaaaagcacttaattaagttgtttatccaaaca 7936922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 32634263 - 32634223
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaag 95  Q
    ||||| ||||||| || ||||||||||||||||||||||||    
T  32634263 ttatggtataagcgttaaattaagttgtttatccaaacaag 32634223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 95
Target Start/End: Complemental strand, 34005897 - 34005865
Alignment:
Q  63 taagcatttaattaagttgtttatccaaacaag 95  Q
    |||||| ||||||||||||||||||||||||||    
T  34005897 taagcacttaattaagttgtttatccaaacaag 34005865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 21516292 - 21516254
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  21516292 ttatgttataagcgtttaattaagttgtttatccaaaca 21516254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 7200991 - 7201032
Alignment:
Q  53 gattatgttataagcatttaattaagttgtttatccaaacaa 94  Q
    ||||| ||||||| ||||||||||||||||||||||||||||    
T  7200991 gattaagttataatcatttaattaagttgtttatccaaacaa 7201032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 16322755 - 16322720
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaacaaga 96  Q
    |||||||| |||||||||||||||||||||||||||    
T  16322755 tataagcacttaattaagttgtttatccaaacaaga 16322720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 37268 - 37230
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  37268 ttatgttataagcatttaattaagctgtttatcgaaaca 37230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 44936747 - 44936781
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaacaag 95  Q
    ||||||||||||||||||||||||||||| |||||    
T  44936747 tataagcatttaattaagttgtttatccatacaag 44936781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 14128628 - 14128661
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaacaa 94  Q
    |||||||||||| |||||||||||||||||||||    
T  14128628 tataagcatttatttaagttgtttatccaaacaa 14128661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 41336796 - 41336836
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaag 95  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  41336796 ttatgctataagcaattaattaagttgtttatccaaacaag 41336836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 44865722 - 44865752
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaa 91  Q
    |||||||||||||||||||||||||||||||    
T  44865722 tataagcatttaattaagttgtttatccaaa 44865752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 24235819 - 24235859
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaag 95  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  24235819 ttatgttataaacacttaattaagttgtttatccaaacaag 24235859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 34857430 - 34857394
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaa 91  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34857430 ttatgttataagcacttaattaagttgtttatccaaa 34857394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 37308216 - 37308254
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaaca 37308254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 50399506 - 50399544
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  50399506 ttatgctataagcaattaattaagttgtttatccaaaca 50399544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 45865987 - 45866055
Alignment:
Q  157 ttatacctgctgaaaaaatttgcgcgcttcatcttcgtgcaacctacccttttctactatgtaatcaaa 225  Q
    |||||||||||| || ||| |||| ||||| | ||| |||||||||||||||| | ||||||| |||||    
T  45865987 ttatacctgctggaagaatgtgcgagcttcgttttcttgcaacctacccttttgtgctatgtagtcaaa 45866055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 22388576 - 22388611
Alignment:
Q  56 tatgttataagcatttaattaagttgtttatccaaa 91  Q
    |||||||||||| |||||||||||||||||||||||    
T  22388576 tatgttataagcgtttaattaagttgtttatccaaa 22388611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 29769052 - 29769083
Alignment:
Q  62 ataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||||||||||||||||||||||    
T  29769052 ataagcatttaattaagttgtttatccaaaca 29769083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 657835 - 657873
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  657835 ttatgtgataagcacttaattaagttgtttatccaaaca 657873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 30133970 - 30133932
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  30133970 ttatgctataagcatttaattgagttgtttatccaaaca 30133932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 22388055 - 22388092
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaac 92  Q
    |||||||||||||  |||||||||||||||||||||||    
T  22388055 ttatgttataagcgcttaattaagttgtttatccaaac 22388092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 2380262 - 2380226
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaa 91  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2380262 ttatgttataagcgcttaattaagttgtttatccaaa 2380226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 7100774 - 7100806
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||||||||| |||||||||||||    
T  7100774 tataagcatttaattaagtagtttatccaaaca 7100806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 20476750 - 20476790
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaag 95  Q
    |||||||||||| |||||||||||||  |||||||||||||    
T  20476750 ttatgttataagaatttaattaagttaattatccaaacaag 20476790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 4855632 - 4855594
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  4855632 ttatgctataagtatttaattaagttgtttatccaaaca 4855594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 39750058 - 39750020
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  39750058 ttatgttatgagcacttaattaagttgtttatccaaaca 39750020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 8472028 - 8471984
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaagatca 99  Q
    ||||| || ||||||||||||| |||||||||||||||| |||||    
T  8472028 ttatgctaaaagcatttaattacgttgtttatccaaacatgatca 8471984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 30585366 - 30585330
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaa 91  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  30585366 ttatgctataagcaattaattaagttgtttatccaaa 30585330  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 39257537 - 39257577
Alignment:
Q  55 ttatgttataagcatttaattaagttgtttatccaaacaag 95  Q
    ||||| |||||||  ||||||||||||||||||||||||||    
T  39257537 ttatgctataagcgcttaattaagttgtttatccaaacaag 39257577  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 30090167 - 30090138
Alignment:
Q  64 aagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||||||||||||||||||||    
T  30090167 aagcatttaattaagttgtttatccaaaca 30090138  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 4663859 - 4663891
Alignment:
Q  61 tataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||| |||||||||||||||||||||||||    
T  4663859 tataagcttttaattaagttgtttatccaaaca 4663891  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 8422985 - 8423025
Alignment:
Q  52 tgattatgttataagcatttaattaagttgtttatccaaac 92  Q
    |||||||| ||||| || |||||||||||||||||||||||    
T  8422985 tgattatgctataaacacttaattaagttgtttatccaaac 8423025  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 24929414 - 24929374
Alignment:
Q  53 gattatgttataagcatttaattaagttgtttatccaaaca 93  Q
    ||||||||||||| || | ||||||||||||||||||||||    
T  24929414 gattatgttataaacactcaattaagttgtttatccaaaca 24929374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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