View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_high_18 (Length: 251)
Name: NF4981_high_18
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 32790259 - 32790073
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat |
143 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32790259 |
tagtaagcagcagtccatcatggacacagttgtgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggtttaaatttaaactatat |
32790160 |
T |
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| Q |
144 |
atgaaaataaggaaacttgacacaagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggttcatctc |
238 |
Q |
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||||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
32790159 |
atgaaaataagaaaacttgacacaagta--------aataaaaataatggatataatttagcacctaaattaataattggctataggttgatctc |
32790073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 32311191 - 32311355
Alignment:
| Q |
67 |
acacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatatatgaaaataaggaaacttgacac |
166 |
Q |
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|||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
32311191 |
acacggttgtgcagatataaggaatcaactttcatgtcgaaattaatgtcaaatgtaggttttaatttaaactatatatgaaaataagaaaacttgacac |
32311290 |
T |
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| Q |
167 |
aagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggt |
231 |
Q |
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| T |
32311291 |
aagtaatcaatataataaaaataacggatataatttagcacctaaattaataattggctataggt |
32311355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 28213606 - 28213405
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat |
143 |
Q |
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|||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| | |||||||||||||| |
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| T |
28213606 |
tagtaagcagaagtccatcatggacacagttgcacggatatatggaatcaactttcacgtcaaaattaatgtcaaatgtagattcaaatttaaactataa |
28213507 |
T |
|
| Q |
144 |
atgaaaataaggaaacttgaca-------caagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggttcatc |
236 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||| ||| |
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| T |
28213506 |
atgaaaataagaaaacttgacagttgacgcaagtaatcaatataatagaaagaatggatataatttagcacctaaactaataattggctgtaggttgatc |
28213407 |
T |
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| Q |
237 |
tc |
238 |
Q |
| |
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|| |
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| T |
28213406 |
tc |
28213405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 32812396 - 32812262
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat |
143 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| |||||||||| ||||||||||| ||||| |
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| T |
32812396 |
tagtaagcagcagtccatcatggacacagttacgcggatata-ggaatcaactttcaccttgaaattaatatcaaatgtagatttaaatttaaattatat |
32812298 |
T |
|
| Q |
144 |
atgaaaataaggaaacttgacacaagtaatcaatat |
179 |
Q |
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||||||||||| |||||||||||| ||||||||||| |
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| T |
32812297 |
atgaaaataagaaaacttgacacaggtaatcaatat |
32812262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 32799159 - 32799083
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaat |
120 |
Q |
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|||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
32799159 |
tagtaagcagcagtccattacggacacagttgcgcggatataaggaatcaaccttcacgtcgaacttaatgttaaat |
32799083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 32306851 - 32306914
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaa |
107 |
Q |
| |
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|||||||| || ||||||||||||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
32306851 |
tagtaagctacagtccatcatggacagagttgcgcagatataaggaatcaaccttcacgtcgaa |
32306914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28213680 - 28213647
Alignment:
| Q |
1 |
caagtcacaactgcttctgtgatggttcctctcc |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
28213680 |
caagtcacaactgcttctgtgatggttcctctcc |
28213647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32311138 - 32311173
Alignment:
| Q |
1 |
caagtcacaactgcttctgtgatggttcctctccta |
36 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
32311138 |
caagtcacaactgcttctgtgatggttcctgtccta |
32311173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32790327 - 32790292
Alignment:
| Q |
1 |
caagtcacaactgcttctgtgatggttcctctccta |
36 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
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| T |
32790327 |
caagtcacaactgcttctgtgatggtttctctccta |
32790292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 32812468 - 32812435
Alignment:
| Q |
3 |
agtcacaactgcttctgtgatggttcctctccta |
36 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
32812468 |
agtcacaactgcgtctgtgatggttcctctccta |
32812435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 31783700 - 31783765
Alignment:
| Q |
44 |
tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaat |
109 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
31783700 |
tagtaagcagcagtccatcatggacacagttgcacggatataaggaatcaactttcacatcgaaat |
31783765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31783630 - 31783665
Alignment:
| Q |
1 |
caagtcacaactgcttctgtgatggttcctctccta |
36 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||| |
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| T |
31783630 |
caaggcacaactgcttctgtgatggttcctctccta |
31783665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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