View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_high_7 (Length: 396)
Name: NF4981_high_7
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 17576971 - 17577346
Alignment:
| Q |
1 |
tcaggttacttgttagcattagataaaccagtttgctttcttgtgatataattttgactccatcttattgcttaannnnnnnncccacttttgtgattga |
100 |
Q |
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| T |
17576971 |
tcaggttacttgttagcattagataaaccagtttgctttcctgtgatataattctgactccatcttattgcttaatttttt--cccacttttgtgattga |
17577068 |
T |
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| Q |
101 |
aattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgtcctcgaaagatcttctattgtttg |
200 |
Q |
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| T |
17577069 |
aattgctccataatgaaatgatgattaaatgatttttatcgcaggatgtggcaaggatttcttggttcttctctgtcctcgaaagatcttctattgtttg |
17577168 |
T |
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| Q |
201 |
cactctacatgttcataatagcaccaaataacttaagaatgtctctagtcagacatctgctttcagatcctacagggtcaactatgataaaaacctactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17577169 |
cactctacatgttcataatagcaccaaataacttaagaatgtctctagtcagacatctgctttcagatcctacagggtcaactatgataaaaacctactt |
17577268 |
T |
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| Q |
301 |
gacgatatagtacgtttctataaactttttcctcttgttaggtaccctctattgggagacaggctagattacattagg |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
17577269 |
gacgatatagtacgtttctataaactttttcctcttgttaggtaccctgtattgagagacaggctagattacattagg |
17577346 |
T |
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