View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4981_high_9 (Length: 351)
Name: NF4981_high_9
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 51 - 333
Target Start/End: Original strand, 47436206 - 47436488
Alignment:
| Q |
51 |
atgaatgaagctgtaatatttatgttatcattatccaagtaaaacaaaacaattgtacaacatactcataaacaaatgaaaataaaatttaccaatgaat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47436206 |
atgaatgaagctgtaatatttatgttatcattatccaagtaaaacaaaacaattgtacaacatactcataaacaaatgaaaataaaatttaccaatgaat |
47436305 |
T |
|
| Q |
151 |
cacttgtctttcacttcaacaccagttttaccagcaatgatgacagaggtagccatgttcaagaacaaaccatgctcgacgacaccttcgagggacgaaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47436306 |
cacttgtctttcacttcaacaccagttttaccagcaatgatgacagaggtagccatgttcaagaacaaaccatgctcgacgacaccttcgagggacgaaa |
47436405 |
T |
|
| Q |
251 |
tctcagctccagcagcatttgcatctctaatgggagtcttaaaatacaaatcaacaatgtaattagaattatcagtcacatag |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47436406 |
tctcagctccagcagcatttgcatctctaatgggagtcttaaaatacaaatcaacaatgtaattagaattatcagtcacatag |
47436488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 47436137 - 47436176
Alignment:
| Q |
13 |
aatatgtatgaatatgagattgtctttcttttattttcat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47436137 |
aatatgtatgaatatgagattgtctttcttttattttcat |
47436176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 47431219 - 47431255
Alignment:
| Q |
289 |
ttaaaatacaaatcaacaatgtaattagaattatcag |
325 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
47431219 |
ttaaagtacaaatcaacaatgtaatttgaattatcag |
47431255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University