View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_1 (Length: 867)
Name: NF4981_low_1
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 48569829 - 48569420
Alignment:
| Q |
1 |
tatatattttacatcagtataatagccgcactgcacatggcaacttattacaagataactatgggagagnnnnnnnctgatgacgtgcagaagatagcct |
100 |
Q |
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| T |
48569829 |
tatatattttacaacagtataatagccgcactgcacatggcaacttattacgagataactatgggagagaaaaaaactgatgacgtgcagaagatagcct |
48569730 |
T |
|
| Q |
101 |
tccaacatccactaaatcatatacaagcctccagaatttgcgtttaatnnnnnnncatattgttgagctcataaacctgcattcatgttcttgatgtaat |
200 |
Q |
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| T |
48569729 |
tccaacatccactaaatcatatacaagcctccagaatttgcgtttaataaaaaa-cattttgttgagctcataaacctgcattcatgttcttgatgtaat |
48569631 |
T |
|
| Q |
201 |
taaataaactcatttgaaatacatttaactaaacagccgtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaat |
300 |
Q |
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| T |
48569630 |
taaataaactcatttgaaatacatttaaccaaacagccgtcatcagccaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaat |
48569531 |
T |
|
| Q |
301 |
tcatcctctgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcgga |
400 |
Q |
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| T |
48569530 |
tcatcctttgtcacccaaacaaaatcctcgcattttctaaagtcaaacttgtttttagcaattacttgggact------tgaagaagaatttatatcgga |
48569437 |
T |
|
| Q |
401 |
agatttcagcaaaggaa |
417 |
Q |
| |
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| T |
48569436 |
agatttcagcaaaggaa |
48569420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 442 - 723
Target Start/End: Complemental strand, 48569421 - 48569141
Alignment:
| Q |
442 |
aattcataatcaattttcacacagaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttc-agaagatgtcaa |
540 |
Q |
| |
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| T |
48569421 |
aattcataatcaattttcaca--gaaaacagaagtattggaaaggctgtggtacaaccaaagaaaggaaatgccttgaaggtatttccagaagatgtcaa |
48569324 |
T |
|
| Q |
541 |
ccttccaagagtagaccaaagtaccataattttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
640 |
Q |
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| T |
48569323 |
ccttccaagagtagaccaaagtaccataattttctatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggcc |
48569224 |
T |
|
| Q |
641 |
attggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
723 |
Q |
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| T |
48569223 |
attggagcatttccaaccaaaaaggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 782 - 854
Target Start/End: Complemental strand, 48569090 - 48569018
Alignment:
| Q |
782 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
854 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtt |
48569018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 1e-40; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 239 - 435
Target Start/End: Original strand, 10821422 - 10821612
Alignment:
| Q |
239 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
338 |
Q |
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|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | |
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| T |
10821422 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctctggaaaatactcaatcaattcatccttagtcacccaaacaaagtcctcgcatttgcc |
10821521 |
T |
|
| Q |
339 |
aaagtcaaacttgtttttagcaattacttgggacttgatcatgacgaagaatttctatcggaagatttcagcaaaggaaaaaatgagcaagtataat |
435 |
Q |
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|| ||| ||||||||||||||||||||||| || | ||| ||||||||||| | |||||||| ||||||||||| |||||||||||||||| |
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| T |
10821522 |
aatgtcgaacttgtttttagcaattacttgtgatt------tgaagaagaatttctgacagaagatttaagcaaaggaaagaatgagcaagtataat |
10821612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 531 - 717
Target Start/End: Original strand, 10821749 - 10821937
Alignment:
| Q |
531 |
aagatgtcaaccttccaagagtagaccaaagtaccataa--ttttccatgaatataccttaaaagatgaggatcctgaatggtcttcattaggctgaaca |
628 |
Q |
| |
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|||||||||||||||||| |||||| |||||||| || ||| | | || ||||||||||||||| ||||||| || ||||| |||||||||||| |
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| T |
10821749 |
aagatgtcaaccttccaatagtagattgaagtaccacaaaatttcctttaaacataccttaaaagatgttgatcctgtctgctcttctttaggctgaaca |
10821848 |
T |
|
| Q |
629 |
accatatgggccattggagcatttccaacaaaataggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
717 |
Q |
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||| |||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||| ||||| || ||||||||||| |
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| T |
10821849 |
accgtatgggccatcggagcatttccgacaaaatatgtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 239 - 368
Target Start/End: Complemental strand, 36145966 - 36145837
Alignment:
| Q |
239 |
gtcatcagctaatgataattttgttaaaaaagtctgcctgctcgggaaaatactccatcaattcatcctctgtcacccaaacaaaatcctcgcattttct |
338 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || || ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| | ||| | |
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| T |
36145966 |
gtcatcagctaatgatcattttgtttaaaaactcagcttgctcaggaaaatactccatcaattcatccttagtcacccaaacaaagtcctcacctttgcc |
36145867 |
T |
|
| Q |
339 |
aaagtcaaacttgtttttagcaattacttg |
368 |
Q |
| |
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|| ||| ||||||||||||||||||||||| |
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| T |
36145866 |
aatgtcgaacttgtttttagcaattacttg |
36145837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 582 - 717
Target Start/End: Complemental strand, 36145584 - 36145449
Alignment:
| Q |
582 |
ataccttaaaagatgaggatcctgaatggtcttcattaggctgaacaaccatatgggccattggagcatttccaacaaaataggtattggagagatctcc |
681 |
Q |
| |
|
||||||||||||||| ||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||| |
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| T |
36145584 |
ataccttaaaagatgttgatcctgtctgctcttctttaggctgaacaacaatatgggccatcggagcatttccgacaaaatatgtatttgaaagatctcc |
36145485 |
T |
|
| Q |
682 |
tatgactgatttcaatgcagactcagcacactgcaa |
717 |
Q |
| |
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| |||||||||||| ||||| || ||||||||||| |
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| T |
36145484 |
caagactgatttcaaggcagattctgcacactgcaa |
36145449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 789 - 852
Target Start/End: Original strand, 10822202 - 10822265
Alignment:
| Q |
789 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
852 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacagg |
10822265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 789 - 852
Target Start/End: Complemental strand, 36145194 - 36145131
Alignment:
| Q |
789 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacagg |
852 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacagg |
36145131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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