View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981_low_12 (Length: 318)

Name: NF4981_low_12
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981_low_12
NF4981_low_12
[»] chr1 (1 HSPs)
chr1 (18-310)||(12877622-12877914)


Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 12877622 - 12877914
Alignment:
Q  18 aatttcgtcataaaatctaaataaaatggatataagtgagatatattcatctagcccaataaaactcattagccatgttcattaaaaaggcaaagaaaag 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12877622 aatttcgtcataaaatctaaataaaatagatataagtgagatatattcatctagcccaataaaactcattagccatgttcattaaaaaggcaaagaaaag 12877721  T
Q  118 aaggaagaaggagagcagctaagatggactaggttcctaatccctaccggcagtcggagcattcgtcatcgccgtcagtctccatggcggccttatctgt 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||| ||    
T  12877722 aaggaagaaggagagcagctaagatggactaggttcctaatccctaccggcagtcggagccttcgtcgtcgccgtcagcctccatggcggccttatccgt 12877821  T
Q  218 tccagtctccttgttctcctcgcctgctttcaccacaacttcggacaacctgccaccgtgttcagcccctacccacactcatcggttcatctc 310  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||    
T  12877822 tccagtctccttgttcttctcgcctgctttcaccacaacttcggacgacctgccaccgtgttcagcccctatccacactcatcggtccatctc 12877914  T

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