View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_15 (Length: 305)
Name: NF4981_low_15
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 287
Target Start/End: Complemental strand, 41351088 - 41350803
Alignment:
| Q |
2 |
atggttagatatgttaacaaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaa |
101 |
Q |
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| T |
41351088 |
atggttagatatgttaacaaatccaaaaccaaaccatacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaa |
41350989 |
T |
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| Q |
102 |
gagacccccctctagcagctagatgaagtggagtacttccagggtagctgcaaatagcaattcattagtccacaaaacaaatagaatgcataagaatcaa |
201 |
Q |
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| T |
41350988 |
gagacccccctctagcagctagatgaagtggagtacttccaggatagctgcaaatagcaattcattagtccacaaaacaaatagaatgcataagaatcaa |
41350889 |
T |
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| Q |
202 |
gtcactaaccatagaatattgagagatcaatacccgtatctaccggttgaagcacaaacaagagctccactatctaatagaatatg |
287 |
Q |
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| T |
41350888 |
gtcactaaccatagaatattgagagatcaatacccgtatctaccggtcgaagcacaaacaagagctccgctatctaatagaatatg |
41350803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 23713337 - 23713237
Alignment:
| Q |
38 |
tacccagatgaatcacgctgaatacgatctgcgccccatgccaacaattcacgaatgcaatcaagagacccccctctagcagctagatgaagtggagtac |
137 |
Q |
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| T |
23713337 |
tacccagatgcatcacgttggagacgatctgcaccccatgctaataattcgcggatgcaatcgagagatcctcctttagctgctagatgaagtggagtac |
23713238 |
T |
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| Q |
138 |
t |
138 |
Q |
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| T |
23713237 |
t |
23713237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 23713141 - 23713088
Alignment:
| Q |
220 |
ttgagagatcaatacccgtatctaccggttgaagcacaaacaagagctccacta |
273 |
Q |
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|||| |||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
23713141 |
ttgaaagatcaatacccatatctgctagttgaagcacaaacaagagctccacta |
23713088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 7346840 - 7346874
Alignment:
| Q |
232 |
tacccgtatctaccggttgaagcacaaacaagagc |
266 |
Q |
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| T |
7346840 |
tacccgtatccaccggttgaagcacaaacaagagc |
7346874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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