View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_16 (Length: 295)
Name: NF4981_low_16
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 47110987 - 47110706
Alignment:
| Q |
1 |
gttcacaggtgaaggaggagatggtcctggatttgggggattttggcccttctttatgggataggaagactgcattgcgattccacatttgcctgccacg |
100 |
Q |
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| T |
47110987 |
gttcacaggtgaaggaggagatggtcctggatttgggggattttggcccttctttatgggataggaagactgcattacgattccacatttgcctgccacg |
47110888 |
T |
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| Q |
101 |
cttgctgctagattacgttccattcttacatagcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47110887 |
cttgctgctagattacgttccattcttacatagcctgattctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttc |
47110788 |
T |
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| Q |
201 |
catacccaacagcggtaacaccatggtctaatgctgtcccacattttcctgtgaatataccctgcaaatattgtgataagta |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47110787 |
catacccaacagcggtaacaccatggtctaatgctgtcccacattttcctgtgaatataccctgcaaatattgtgataagta |
47110706 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 5547495 - 5547600
Alignment:
| Q |
139 |
ttctccccagctcttaccccatgaatttcttactatccaataatcgactccattttctgttccatacccaacagcggtaacaccatggtctaatgctgtc |
238 |
Q |
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|||||||||||| ||||||||||||||| || ||||||||||| || |||||||| || || |||||||| | |||||||||||||| |||||| |
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| T |
5547495 |
ttctccccagctaccaccccatgaatttctcacaatccaataatctttaccgttttctgtaccgtatccaacagctgcaacaccatggtctagtgctgtt |
5547594 |
T |
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| Q |
239 |
ccacat |
244 |
Q |
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|||||| |
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| T |
5547595 |
ccacat |
5547600 |
T |
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