View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981_low_19 (Length: 251)

Name: NF4981_low_19
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981_low_19
NF4981_low_19
[»] chr2 (10 HSPs)
chr2 (44-238)||(32790073-32790259)
chr2 (67-231)||(32311191-32311355)
chr2 (44-238)||(28213405-28213606)
chr2 (44-179)||(32812262-32812396)
chr2 (44-120)||(32799083-32799159)
chr2 (44-107)||(32306851-32306914)
chr2 (1-34)||(28213647-28213680)
chr2 (1-36)||(32311138-32311173)
chr2 (1-36)||(32790292-32790327)
chr2 (3-36)||(32812435-32812468)
[»] chr5 (2 HSPs)
chr5 (44-109)||(31783700-31783765)
chr5 (1-36)||(31783630-31783665)


Alignment Details
Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 32790259 - 32790073
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat 143  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  32790259 tagtaagcagcagtccatcatggacacagttgtgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggtttaaatttaaactatat 32790160  T
Q  144 atgaaaataaggaaacttgacacaagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggttcatctc 238  Q
    ||||||||||| ||||||||||||||||        |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  32790159 atgaaaataagaaaacttgacacaagta--------aataaaaataatggatataatttagcacctaaattaataattggctataggttgatctc 32790073  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 32311191 - 32311355
Alignment:
Q  67 acacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatatatgaaaataaggaaacttgacac 166  Q
    |||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||    
T  32311191 acacggttgtgcagatataaggaatcaactttcatgtcgaaattaatgtcaaatgtaggttttaatttaaactatatatgaaaataagaaaacttgacac 32311290  T
Q  167 aagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggt 231  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  32311291 aagtaatcaatataataaaaataacggatataatttagcacctaaattaataattggctataggt 32311355  T

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Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 44 - 238
Target Start/End: Complemental strand, 28213606 - 28213405
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat 143  Q
    |||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||  | ||||||||||||||     
T  28213606 tagtaagcagaagtccatcatggacacagttgcacggatatatggaatcaactttcacgtcaaaattaatgtcaaatgtagattcaaatttaaactataa 28213507  T
Q  144 atgaaaataaggaaacttgaca-------caagtaatcaatataatagaaataatggatatactttagcacctaaattaataattggctataggttcatc 236  Q
    ||||||||||| ||||||||||       |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||||| |||    
T  28213506 atgaaaataagaaaacttgacagttgacgcaagtaatcaatataatagaaagaatggatataatttagcacctaaactaataattggctgtaggttgatc 28213407  T
Q  237 tc 238  Q
    ||    
T  28213406 tc 28213405  T

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Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 32812396 - 32812262
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaatgtaggattaaatttaaactatat 143  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||||  ||||||||||| |||||    
T  32812396 tagtaagcagcagtccatcatggacacagttacgcggatata-ggaatcaactttcaccttgaaattaatatcaaatgtagatttaaatttaaattatat 32812298  T
Q  144 atgaaaataaggaaacttgacacaagtaatcaatat 179  Q
    ||||||||||| |||||||||||| |||||||||||    
T  32812297 atgaaaataagaaaacttgacacaggtaatcaatat 32812262  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 32799159 - 32799083
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaattaatgtcaaat 120  Q
    |||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  32799159 tagtaagcagcagtccattacggacacagttgcgcggatataaggaatcaaccttcacgtcgaacttaatgttaaat 32799083  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 32306851 - 32306914
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaa 107  Q
    ||||||||  || ||||||||||||| |||||||| |||||||||||||||| |||||||||||    
T  32306851 tagtaagctacagtccatcatggacagagttgcgcagatataaggaatcaaccttcacgtcgaa 32306914  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28213680 - 28213647
Alignment:
Q  1 caagtcacaactgcttctgtgatggttcctctcc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  28213680 caagtcacaactgcttctgtgatggttcctctcc 28213647  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 32311138 - 32311173
Alignment:
Q  1 caagtcacaactgcttctgtgatggttcctctccta 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  32311138 caagtcacaactgcttctgtgatggttcctgtccta 32311173  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32790327 - 32790292
Alignment:
Q  1 caagtcacaactgcttctgtgatggttcctctccta 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  32790327 caagtcacaactgcttctgtgatggtttctctccta 32790292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 32812468 - 32812435
Alignment:
Q  3 agtcacaactgcttctgtgatggttcctctccta 36  Q
    |||||||||||| |||||||||||||||||||||    
T  32812468 agtcacaactgcgtctgtgatggttcctctccta 32812435  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 31783700 - 31783765
Alignment:
Q  44 tagtaagcagcattccatcatggacacagttgcgcggatataaggaatcaactttcacgtcgaaat 109  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  31783700 tagtaagcagcagtccatcatggacacagttgcacggatataaggaatcaactttcacatcgaaat 31783765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31783630 - 31783665
Alignment:
Q  1 caagtcacaactgcttctgtgatggttcctctccta 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  31783630 caaggcacaactgcttctgtgatggttcctctccta 31783665  T

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