View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_20 (Length: 248)
Name: NF4981_low_20
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_20 |
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| [»] scaffold2107 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 13473670 - 13473882
Alignment:
| Q |
1 |
cgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttgcg |
100 |
Q |
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| T |
13473670 |
cgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttacg |
13473769 |
T |
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| Q |
101 |
aacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgtt |
200 |
Q |
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| T |
13473770 |
aacgcatgtaaaccgcttaacagatttgacaggaagtttagagagaatac--agtacaatatcatcgggtatatagctactactcaccttctcaaatgtt |
13473867 |
T |
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| Q |
201 |
ggagccatagaagga |
215 |
Q |
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| T |
13473868 |
ggagccatagaagga |
13473882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 13473889 - 13473925
Alignment:
| Q |
210 |
gaaggagtacaactaaatcatgtaagcacaggttctg |
246 |
Q |
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| T |
13473889 |
gaaggagtacaactaaatcatgtaaccacacgttctg |
13473925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 9763572 - 9763456
Alignment:
| Q |
76 |
caaacaaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtata |
175 |
Q |
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| T |
9763572 |
caaacaaaagagaccatgatttgcgaacacaagaaaaatgcttaacagatttaacaggaagtttagagagaatacagaaagcaatgtcatctggtatata |
9763473 |
T |
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| Q |
176 |
gctactactcaccttct |
192 |
Q |
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| T |
9763472 |
gctactactaaccttct |
9763456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13280430 - 13280227
Alignment:
| Q |
1 |
cgtcgtcgtcatcatacaatgaatgggatttggaaaccaaattgttgcggaacatggttaggaaagtaggattgccaaacaaaagtgaccatggtttgcg |
100 |
Q |
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||||||| ||||||||| || || ||||||||||| | |||||||||||||||| | | |||| |||| || |||| ||| | ||||||| |||||| |
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| T |
13280430 |
cgtcgtcatcatcataccctgtttgagatttggaaacaagattgttgcggaacatgttcatgaaaatagggttttcaaataaatgagaccatgatttgcg |
13280331 |
T |
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| Q |
101 |
aacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatcgggtgtatagctactactcaccttctcaaatgtt |
200 |
Q |
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||| || | ||| || |||| | ||| | ||| |||||||| |||||| ||| |||||||||||||| |||| ||| ||| ||||||||||| ||| |
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| T |
13280330 |
aacacaagcaaagcgtttaagatgtttaatagggagtttagagagaatagagaaaacaatatcatcgggtatataagtaccactaaccttctcaaacgtt |
13280231 |
T |
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| Q |
201 |
ggag |
204 |
Q |
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|||| |
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| T |
13280230 |
ggag |
13280227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 40399838 - 40399874
Alignment:
| Q |
181 |
tactcaccttctcaaatgttggagccatagaaggagt |
217 |
Q |
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| T |
40399838 |
tactcaccttctcaaatgttggagccatggaaggagt |
40399874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2107 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2107
Description:
Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 55 - 140
Alignment:
| Q |
81 |
aaaagtgaccatggtttgcgaacgcatgtaaaccgcttaacagatttgacaggaagtttagaaagaatacagagtgcaatatcatc |
166 |
Q |
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| T |
55 |
aaaagagaccatgatttacgaacgcaagtaaatcgcttgagagacttgatagggagtttagagagaataccaaatgcaatatcatc |
140 |
T |
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