View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4981_low_21 (Length: 240)

Name: NF4981_low_21
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4981_low_21
NF4981_low_21
[»] chr8 (1 HSPs)
chr8 (9-222)||(11401913-11402123)
[»] chr6 (1 HSPs)
chr6 (126-222)||(29303559-29303652)
[»] chr5 (2 HSPs)
chr5 (126-222)||(12529390-12529483)
chr5 (126-222)||(35841539-35841632)
[»] chr4 (4 HSPs)
chr4 (126-222)||(27730603-27730696)
chr4 (126-222)||(45965826-45965919)
chr4 (6-95)||(24146389-24146478)
chr4 (148-223)||(24146585-24146660)
[»] chr1 (2 HSPs)
chr1 (126-222)||(29282644-29282737)
chr1 (126-222)||(49220639-49220732)
[»] chr2 (2 HSPs)
chr2 (126-222)||(42913503-42913596)
chr2 (126-222)||(42300412-42300505)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 11401913 - 11402123
Alignment:
Q  9 tgataacacatcttaaagctcacaatattgggagctttattgagcttgcttcacaacaaggagctaatgaaaatactcgtagaagggcaatatcacaaat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11401913 tgataacacatcttaaagctcacaatattgggagctttattgagcttggttcacaacaaggagctaatgaaaatactcgtagaagggcaatatcacaaat 11402012  T
Q  109 tatcaaagaaataaagagggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaa 208  Q
    |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402013 tatcaaagaaataaagagggacatattgaag---ttgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaa 11402109  T
Q  209 aggtatgaaatgtc 222  Q
    ||||||||||||||    
T  11402110 aggtatgaaatgtc 11402123  T

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Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 29303559 - 29303652
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  29303559 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 29303652  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 12529483 - 12529390
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  12529483 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 12529390  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 35841539 - 35841632
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  35841539 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 35841632  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 27730696 - 27730603
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  27730696 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 27730603  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 45965826 - 45965919
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  45965826 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 45965919  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 24146389 - 24146478
Alignment:
Q  6 tgatgataacacatcttaaagctcacaatattgggagctttattgagcttgcttcacaacaaggagctaatgaaaatactcgtagaaggg 95  Q
    |||||| ||||||||||||||||||||| ||  |||||||| ||||| ||| || ||||||||||||| |||||  | ||||||||||||    
T  24146389 tgatgacaacacatcttaaagctcacaacatatggagctttgttgagtttggtttacaacaaggagctgatgaacttgctcgtagaaggg 24146478  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 24146585 - 24146660
Alignment:
Q  148 acatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtct 223  Q
    |||| |||||||  ||||| ||| ||||| |||  |||| |||||| ||||||| |||||||||||||||||||||    
T  24146585 acataaaggagtgaagaaagctcagaaatcaaagttgcagtctctgcgtagagagtacgaaaggtatgaaatgtct 24146660  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 29282737 - 29282644
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  29282737 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 29282644  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 49220732 - 49220639
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| ||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  49220732 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagctgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 49220639  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 222
Target Start/End: Complemental strand, 42913596 - 42913503
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||| ||||| |||  |||| |||||| ||||||| ||||||||||||||||||||    
T  42913596 gggacatattgaagtt---gtcacataaaggagtagagaaagctcagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 42913503  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 222
Target Start/End: Original strand, 42300412 - 42300505
Alignment:
Q  126 gggacatattgaagttattgttacatgaaggagtagagaaaactccgaaataaaaactgcaatctctgtgtagagattacgaaaggtatgaaatgtc 222  Q
    ||||||||||||||||   || |||| |||||||||||||| ||  ||||| |||  |||| |||||| ||||||| ||||||||||||||||||||    
T  42300412 gggacatattgaagtt---gtcacataaaggagtagagaaagcttagaaatcaaagttgcagtctctgcgtagagaatacgaaaggtatgaaatgtc 42300505  T

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