View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_5 (Length: 473)
Name: NF4981_low_5
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 340
Target Start/End: Complemental strand, 30199954 - 30199644
Alignment:
| Q |
10 |
attattctacaaagagtttaaagggtcatgcataataatattatacctcgaggtctataaatgtagtttttaagagaattaattttgtcatatag-aaaa |
108 |
Q |
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| T |
30199954 |
attattctacaaagagttcaaagggtcatgcatagtaatattatacctcgaggtctataaatgtagtttttaagaggattggttttgtcatatagaaaaa |
30199855 |
T |
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| Q |
109 |
taatactgacgctgcttgttgtatgtttgtctttcattcttgtgattttctataatatatattataaatgagcattaaaattgcctaaatttctaaattc |
208 |
Q |
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| T |
30199854 |
taatactgacacagcttgttgtatgtttgtctttcattcctgtgattttctata--atatattataaatgagcatcaaaattgcctaaatttctaaat-- |
30199759 |
T |
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| Q |
209 |
cctgtaatttctaaattccctataatttcctaacagatgtcaattgttatttcaactgaaagctacttcctccaacagtcacggttgtaagtaaacattc |
308 |
Q |
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| T |
30199758 |
----------------tccctataatttcctaacagatatcaattgttatttcaactgaaagctatttcctccaacagtcactgttgtaagtaaacattc |
30199675 |
T |
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| Q |
309 |
ttttttccgaattcattgaataattgatgtat |
340 |
Q |
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| T |
30199674 |
tttttt-cgaattcattgaataattgatgtat |
30199644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 351 - 429
Target Start/End: Complemental strand, 30199572 - 30199494
Alignment:
| Q |
351 |
catcaatgaatacgaattataagcattgaaacagcaaaatattgaggatgctttctatattttaataataaaacagagt |
429 |
Q |
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| T |
30199572 |
catcaatgaatacgaattataagcattgaaacagcaaaatattgaggatgctttctatattttaataataaaacagagt |
30199494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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