View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_6 (Length: 434)
Name: NF4981_low_6
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Original strand, 34388185 - 34388585
Alignment:
| Q |
17 |
cagtattggcggaatgtgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaattt |
116 |
Q |
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| T |
34388185 |
cagtattggcggaatgtgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaattt |
34388284 |
T |
|
| Q |
117 |
gttgcacctataacaccaatgtgaagacatctacctatagatttgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaaccaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34388285 |
gttgcacctataacaccaatgtgaagacatctacctatagatttgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaacccca |
34388384 |
T |
|
| Q |
217 |
caattgaaagtttgattagagnnnnnnnnnnnnnnnnnnnnntgagattcaaaatcttaaggcttcaaatttcaatattgttgcaatgtgagattggaaa |
316 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34388385 |
caattgaaagtttgattagagaaaaagaaaagaaacaaaaaatgagattcaaaatcttaaggcttcaaatttcaatattgttgcaatgtgagattagaaa |
34388484 |
T |
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| Q |
317 |
aactatgaactgtataatttctgtgtttgagacaagagagagaagggtttcatagtacatcttagggaagagaaaatggcaggttcatgttcatggtatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34388485 |
aactatgaactgtataatttctgtgtttgagacaagagagagaagggtttcatagtacatcttagggaagagaaaatggcaggttcatgttcatggtatt |
34388584 |
T |
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| Q |
417 |
g |
417 |
Q |
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| T |
34388585 |
g |
34388585 |
T |
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