View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4981_low_9 (Length: 351)
Name: NF4981_low_9
Description: NF4981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4981_low_9 |
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| [»] scaffold0129 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 13473648 - 13473315
Alignment:
| Q |
4 |
tcaatatgtttttggttccgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccatatgatcatctacc |
103 |
Q |
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| T |
13473648 |
tcaatatgtttttggtttcgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccatatgatcatctacc |
13473549 |
T |
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| Q |
104 |
aagtgataattttcttcctcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtattatggaacccg |
203 |
Q |
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| T |
13473548 |
aagtgacaattttcttcttcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtattatggaacccg |
13473449 |
T |
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| Q |
204 |
gctactaaggaaattaaggtcgtttaccctagccttaatgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggttatgatcatgtta |
303 |
Q |
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| T |
13473448 |
gctactaaggaaattaaggtcgtttctcctagccttaacgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggttatgatcatgtta |
13473349 |
T |
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| Q |
304 |
gagatgatttcaatgtcattcgacgtttgtattg |
337 |
Q |
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| T |
13473348 |
gagatgatttcaatgtcatttgacgtttgtattg |
13473315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 327
Target Start/End: Original strand, 26606657 - 26606709
Alignment:
| Q |
275 |
tcttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcgac |
327 |
Q |
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| T |
26606657 |
tcttcatggatttggttatgattctgttagagatgattacaaggtgattcgac |
26606709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 27736033 - 27735998
Alignment:
| Q |
277 |
ttcatgcatttggttatgatcatgttagagatgatt |
312 |
Q |
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| T |
27736033 |
ttcatggatttggttatgatcatgttagagatgatt |
27735998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 9764 - 9801
Alignment:
| Q |
27 |
atgttgtatatgctttcaggtgagaggtttgagaataa |
64 |
Q |
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| T |
9764 |
atgttgtatttgctttctggtgagaggtttgagaataa |
9801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 17650 - 17601
Alignment:
| Q |
277 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
326 |
Q |
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| T |
17650 |
ttcatggatttggttatgaccatgttagagatgactacaaagtcattcga |
17601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 34046 - 33997
Alignment:
| Q |
277 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
326 |
Q |
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| T |
34046 |
ttcatggatttggttatgagcatgttagagatgactacaaggtcattcga |
33997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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