View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982-Insertion-2 (Length: 835)
Name: NF4982-Insertion-2
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 357
Target Start/End: Original strand, 40057567 - 40057916
Alignment:
| Q |
8 |
attacttgctataacctactagagaatcaacgtaagtacgtaacacaccccgccgctttgagaaggagcatatatcaatatagtcacataggtgtttgat |
107 |
Q |
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| T |
40057567 |
attacttgctagaacttactagagaatcaacgtaagtacgtaacacaccccgccgctttgagaaggagcatatatcaatatagtcacataggtgtttgat |
40057666 |
T |
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| Q |
108 |
tcgtgcataatgaatatgtaaaaggtgtaagtttcaaataagggtttcaaagaagggttataatcatcttttttgagggaagagttataatcttgttgtt |
207 |
Q |
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| T |
40057667 |
tcgtgcataatgaatatgtaaaaggtgtaagtttcaaataagggtttcaaagaagggttataatcttcttttttgagggaagagttataatcttgttgtt |
40057766 |
T |
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| Q |
208 |
tctaatgtccaccaagcgaaaaatatggaaataaattaccgacataaaatgaaagagctctaatatatgtatccaccaaccgtaaactatggaaataatc |
307 |
Q |
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| T |
40057767 |
tctaatgtccaccaagcgaaaaatatggaaataaattaccgacataaaatgaaagagctctaatatatgtatccaccaaccgtaaactatggaaataatc |
40057866 |
T |
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| Q |
308 |
gactgccacgaacgaacaaaatttgtaatcaaagaggggtttgatttttt |
357 |
Q |
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| T |
40057867 |
gactgccacgaacgaaccaaatttgtaatcaaagaggggtttgatttttt |
40057916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 445 - 676
Target Start/End: Original strand, 40058006 - 40058237
Alignment:
| Q |
445 |
agggttgtagtcctctagttgacattgccaatttcccaccaaccgcaaaatagggaaatattgtaaaaggaactatttagaacccaaatatggcaggcac |
544 |
Q |
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| T |
40058006 |
agggttgtagtcctctagttgacattgccaatttcccaccaaccgcaaaatagggaaatattgtaaaaggaactatttagaacccaaatatggcaggcac |
40058105 |
T |
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| Q |
545 |
atattcattttggtcattgaannnnnnnnatgatccaattcagtcgtagataaaattacaactcaaattagtctttatcattttcatataggagacaaat |
644 |
Q |
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| T |
40058106 |
atattcattttcgtcattgaattttttttatgatccaagtcagtcgtagataaaattacaactcaaattagtctttatcattttcatacaggagacaaat |
40058205 |
T |
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| Q |
645 |
aatgccttctattataataaaccagtgattaa |
676 |
Q |
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| T |
40058206 |
aatgccttctattataataaaccagtgattaa |
40058237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 663 - 832
Target Start/End: Original strand, 40058380 - 40058553
Alignment:
| Q |
663 |
aaaccagtgattaatttatcttgagtatgataatgtcacaaattaatttggatttaaaatgggtcttctctcctttttcttttactagaagaaaaagata |
762 |
Q |
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| T |
40058380 |
aaaccagtgattaatttatcttaagtatgataatgtcacaaattaatttggatttaaaatgggtcttctctcctttttcttttactagaagaaaaagata |
40058479 |
T |
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| Q |
763 |
tgtaattgatcgaagttgatccgtcaatc----ttaaacaaacaaacactacaataaaacaagaaatcaataac |
832 |
Q |
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| T |
40058480 |
tgtaattgatcgaagttgatccatcaatcttaattaagcaaacaaacactacaataaaacaagaaatcaataac |
40058553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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