View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982-Insertion-3 (Length: 660)
Name: NF4982-Insertion-3
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982-Insertion-3 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Original strand, 595660 - 596312
Alignment:
| Q |
8 |
tattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgt |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595660 |
tattgataatgtgattatgaatattcaattgaattaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgt |
595759 |
T |
|
| Q |
108 |
tcaatatcaatcaaatcttccttttcgctctttacannnnnnnggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatga |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595760 |
tcaatatcaatcaaatcttccttttcgctctttacatttttttggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatga |
595859 |
T |
|
| Q |
208 |
tattaaagctaaatggaggcatttcaagcggacaaatggaggnnnnnnnnagtcgatattcaaatggatgcttataacaacaaatgattgtaaaattcat |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595860 |
tattaaagctaaatggaggcatttcaagcggacaaatggaggttttttttaatcgatattcaaatggatgcttataacaacaaatgattgtaaaattcat |
595959 |
T |
|
| Q |
308 |
attcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattcccttgcagccattttgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
595960 |
attcatggtagttattatatgataaataatttaaataaacttgttgaaaagaggatcacaatgaaaatgttatacaccattcccttgcagccattttgaa |
596059 |
T |
|
| Q |
408 |
gtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagc |
507 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
596060 |
gtgttttatgcaaccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaatcgcaatggaagc |
596159 |
T |
|
| Q |
508 |
acctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggggaataccgttggatgaacaattggata |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
596160 |
acctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggagaataccgttggatgaacaattggata |
596259 |
T |
|
| Q |
608 |
taatatttttggcctgaatgaaaacctgtaaatttctccaaacatgagtgtgt |
660 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
596260 |
taatatttttggtctgaatgaaaacctgtaaatttctccaaacatgagtgtgt |
596312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 23962413 - 23962328
Alignment:
| Q |
41 |
ttaaaggtatgccatttccttttcgcagagtgctggaaatttcttcaaaggtagcagcttttggtgttcaatatcaatcaaatctt |
126 |
Q |
| |
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||||||||||| |||| ||||||| ||| |||||| |||||| ||||||| |||||||| ||||||||||||||||| |||| |
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| T |
23962413 |
ttaaaggtatgtcattgtcttttcgtgcggtgttggaaacttcttcgaaggtagtagcttttgatgttcaatatcaatcaagtctt |
23962328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 151 - 658
Target Start/End: Original strand, 17373398 - 17373908
Alignment:
| Q |
151 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaggcatttcaagcggacaaatggaggn |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
17373398 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaaagctaaatggaagcatttcaagtagacaaatggaggt |
17373497 |
T |
|
| Q |
251 |
nnnnnnnagtcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttg |
350 |
Q |
| |
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| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
17373498 |
tttttttaatcgatattcaaatggatgcttatagcaacaaatgattgtaaaattcatattcatggtagttattatatgatgaataatttaaataaactcg |
17373597 |
T |
|
| Q |
351 |
ttgaaaagaggatcacaatgaaaatgtta---tacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17373598 |
ttgaaaagaggatcacaatgaaaatgttactatacaccattcccttgcagccattttgaagtgttttatgcatccattaattggacacttttccaaggac |
17373697 |
T |
|
| Q |
448 |
gacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
547 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17373698 |
gacacttatcaccgttcaaacatcctccatttaagtttattttccaattgcaatggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacg |
17373797 |
T |
|
| Q |
548 |
atgggggttaccaagccatgtaaaactgcaggggaataccgttggatgaacaattggatataatatttttggcctgaatgaaaacctgtaaatttctcca |
647 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
17373798 |
atgggggttaccaagccatgtaaaactgcaggagaataccgttggatgaacaattggatataatatttttggtctgaatgaaaacctgtaaatttctcca |
17373897 |
T |
|
| Q |
648 |
aacatgagtgt |
658 |
Q |
| |
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||||||||||| |
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| T |
17373898 |
aacatgagtgt |
17373908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 33006051 - 33005946
Alignment:
| Q |
263 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaagagga |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
33006051 |
atattcaaatggatgcttataacaacaaatgattgtaaaattcat---catggtagttattatatgatgaataattaaaataaacttgttgaaaagagga |
33005955 |
T |
|
| Q |
363 |
tcacaatga |
371 |
Q |
| |
|
||||||||| |
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|
| T |
33005954 |
tcacaatga |
33005946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 371
Target Start/End: Complemental strand, 7632926 - 7632818
Alignment:
| Q |
260 |
tcgatattcaaatggatgcttataacaacaaatgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaaaga |
359 |
Q |
| |
|
||||| ||||||||| ||||||| |||| |||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||||||||||||| |
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|
| T |
7632926 |
tcgattttcaaatggttgcttatgacaa---atgattgtaaaattcatattcatggtggttattttatgatgaataattgaaataaacttgttgaaaaga |
7632830 |
T |
|
| Q |
360 |
ggatcacaatga |
371 |
Q |
| |
|
|||||||||||| |
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|
| T |
7632829 |
ggatcacaatga |
7632818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 33006205 - 33006147
Alignment:
| Q |
154 |
aaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
33006205 |
aaacaaatctcatt-tttatgattagtcaaagaaaaagatctcgttctttatgatattaa |
33006147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 7633083 - 7633021
Alignment:
| Q |
151 |
ggtaaacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
213 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||| |||| |||| ||||||||||||||||| |
|
|
| T |
7633083 |
ggtaaacaaatcccatactttatgattagtaaaaataaaaaatctcgttctttatgatattaa |
7633021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 402 - 585
Target Start/End: Complemental strand, 6608887 - 6608704
Alignment:
| Q |
402 |
tttgaagtgttttatgcatccattaattggacacttttccaaggacgacacttatcaccgttcaaacagcctccatttaagtttattttccaattgcaat |
501 |
Q |
| |
|
||||||||||| || |||||||||||||||| ||||||||||||| |||||| | | ||||||||||||||||||||| ||||||| ||| |||||| |
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|
| T |
6608887 |
tttgaagtgttgtacgcatccattaattggatacttttccaaggaacacacttttgatcgttcaaacagcctccatttacgtttattccccatgtgcaat |
6608788 |
T |
|
| Q |
502 |
ggaagcacctgtcacgtgattggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcaggggaata |
585 |
Q |
| |
|
| ||| ||| ||| ||||||||||||||||| ||||| | ||||||||| | |||||||||||||||||| ||||| |
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|
| T |
6608787 |
gattgcaattgtgacggttttggtcgtaaatgtcaagataataaacatgggggttttgaggccatgtaaaactgcaggagaata |
6608704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 6613356 - 6613302
Alignment:
| Q |
524 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
578 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
6613356 |
gtcgtaaatgtcaagataatgtcgatgcgggtttccaggccatgtaaaactgcag |
6613302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 22823229 - 22823281
Alignment:
| Q |
521 |
ttggtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaac |
573 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||| |
|
|
| T |
22823229 |
ttggtcgtaaatgtcaagataatgtcgatgtgggtttccaggccatgtaaaac |
22823281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 578
Target Start/End: Original strand, 9145868 - 9145922
Alignment:
| Q |
524 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
578 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |
|
|
| T |
9145868 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcag |
9145922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 578
Target Start/End: Complemental strand, 9180564 - 9180510
Alignment:
| Q |
524 |
gtcgtaaatgtcaaaataatgacgatgggggttaccaagccatgtaaaactgcag |
578 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| || |||||||||||| |||| |
|
|
| T |
9180564 |
gtcgtaaatgtcaagataatgacgataggggttttcaggccatgtaaaaccgcag |
9180510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 15290410 - 15290496
Alignment:
| Q |
287 |
acaaatgattgtaaaattcatattcatggtagttattat--atgataaataatttaaataaacttgttgaaaagaggatcacaatga |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || | ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15290410 |
acaaatgattgtaaaattcatattcatggtagtttttttttatgatgaataattgaaataaacttgttgaaaagaggatcacaatga |
15290496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 26588056 - 26587991
Alignment:
| Q |
291 |
atgattgtaaaattcatattcatggtagttattatatgataaataatttaaataaacttgttgaaa |
356 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | || ||||||| | ||||||||||||||| |
|
|
| T |
26588056 |
atgattgtaaaattcatatacaaagtagttattatttcatgaataattgacataaacttgttgaaa |
26587991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 15290245 - 15290303
Alignment:
| Q |
155 |
aacaaatctcattctttatgattagtcaaagaaaaagatcttgttctttatgatattaa |
213 |
Q |
| |
|
||||||||||||||||||| |||||| ||| ||||| || ||||||||||||||||| |
|
|
| T |
15290245 |
aacaaatctcattctttatcattagtaaaaaaaaaaatactcgttctttatgatattaa |
15290303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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