View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4982-Insertion-7 (Length: 325)

Name: NF4982-Insertion-7
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4982-Insertion-7
NF4982-Insertion-7
[»] chr4 (1 HSPs)
chr4 (8-325)||(41532887-41533207)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 325
Target Start/End: Complemental strand, 41533207 - 41532887
Alignment:
Q  8 ataacatgtttctacttttgttggcaaaattcttgcttattctttatgggctgtaaaatgatccttttaaaacattttccttgaca---cgcctcaatat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||    
T  41533207 ataacatgtttctacttttgttggcaaaattcttgcttattctttatgggctgtaaaatgatccttttaaaacattttccatgacatgacgcctcaatat 41533108  T
Q  105 tgaagttggggacaatatatatcaaactctaaacatgaaaccaataattgacaccccattttaaaataatactttgcattcttaccttcataagagtttt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533107 tgaagttggggacaatatatatcaaactctaaacatgaaaccaataattgacaccccattttaaaataatactttgcattcttaccttcataagagtttt 41533008  T
Q  205 ttcctgtgaatattgctaaacagttaacgtgcccatctccatgaaatactgttgttatgtaatttcaacaaatacccaagcctaaatttgtgtcatgttg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41533007 ttcctgtgaatattgctaaacagttaacgtgcccatctccatgaaatactgttgttatgtaatttcaacaaatacccaagcctaaatttgtgtcatgttg 41532908  T
Q  305 tgcttctcaatgacgatgaca 325  Q
    |||||||||||||| ||||||    
T  41532907 tgcttctcaatgacaatgaca 41532887  T

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