View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4982-Insertion-8 (Length: 302)

Name: NF4982-Insertion-8
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4982-Insertion-8
NF4982-Insertion-8
[»] chr2 (28 HSPs)
chr2 (8-302)||(39214738-39215032)
chr2 (138-302)||(39601867-39602031)
chr2 (137-263)||(39450414-39450540)
chr2 (140-251)||(39382247-39382358)
chr2 (43-114)||(39458210-39458281)
chr2 (42-131)||(39399012-39399101)
chr2 (142-254)||(39220086-39220198)
chr2 (140-254)||(39199516-39199630)
chr2 (137-260)||(39151816-39151939)
chr2 (13-112)||(39382183-39382282)
chr2 (137-260)||(39458127-39458250)
chr2 (49-107)||(39129491-39129549)
chr2 (13-107)||(39199452-39199546)
chr2 (141-251)||(39488225-39488335)
chr2 (13-114)||(39450500-39450601)
chr2 (43-131)||(39488190-39488278)
chr2 (43-114)||(39136282-39136353)
chr2 (137-196)||(39399044-39399103)
chr2 (43-114)||(39422489-39422560)
chr2 (49-106)||(39416378-39416435)
chr2 (226-279)||(39479278-39479331)
chr2 (43-112)||(39601994-39602063)
chr2 (53-101)||(27154993-27155041)
chr2 (43-131)||(39151882-39151970)
chr2 (51-103)||(39391674-39391726)
chr2 (43-103)||(39474277-39474337)
chr2 (67-107)||(39479182-39479222)
chr2 (190-302)||(44614352-44614464)
[»] chr6 (1 HSPs)
chr6 (54-133)||(16112406-16112485)
[»] chr7 (1 HSPs)
chr7 (43-114)||(19806643-19806714)


Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 39215032 - 39214738
Alignment:
Q  8 cctcgtcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctc 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39215032 cctcgtcaattcttctaacacaactgacctgtgtcttcttattttcaagctctttacagcactcctcaacatatctctttatggactgcaatctcttctc 39214933  T
Q  108 ctctactgtcctcttcctcttgcaatgcccaatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataat 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39214932 ctctactttcctcttcctcttgcaatgcccaatatctctctttagagactgaaatctcttctcatctacttgcaccttccttttgcattcctcaaataat 39214833  T
Q  208 ttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatc 302  Q
    || ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39214832 ttttctaacatagcaaggtctttcttcagcgaggaaaatgatttatgggttgatttgcctggccttttaattaaatccgacaaaagaatatcatc 39214738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 302
Target Start/End: Complemental strand, 39602031 - 39601867
Alignment:
Q  138 aatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcagc 237  Q
    ||||||| ||||||  ||||||||||| ||||| |||| || |  |||| | |||| ||||  |||| | || |||||||  |||||| |||||||||||    
T  39602031 aatatctatctttatggactgcaatctattctcttctaatttcgtcttcttattgccttcctgaaatgagttttctaacaatgcaaggcctttcttcagc 39601932  T
Q  238 aaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgacaaaagaatatcatc 302  Q
     |||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  39601931 gaggaaaatgatttatcagttgatttgcttggccttttaattaaatccaacaaaggaatatcatc 39601867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 39450540 - 39450414
Alignment:
Q  137 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcag 236  Q
    |||||||| |||| |  |||||||||||||| || ||||||| |  ||||||||| |||||| |||||||||| |||||||  | |||||||||||||||    
T  39450540 caatatctgtcttgatggactgcaatctcttttcttctactttctgcttccttttacattcctcaaataatttttctaacaatgtaaggtctttcttcag 39450441  T
Q  237 caaggaaaatgatttatcggttgattt 263  Q
    | |||||||||||||||| ||| ||||    
T  39450440 cgaggaaaatgatttatcagttaattt 39450414  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 251
Target Start/End: Original strand, 39382247 - 39382358
Alignment:
Q  140 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcagcaa 239  Q
    ||||||||||||  ||||| ||||||||||| |||| || |  ||||| ||||||||||||||||||||  |||||||  | |||||||||||||||| |    
T  39382247 tatctctctttatggactgtaatctcttctcttctagtttctgcttccatttgcattccacaaataattcttctaacagcgtaaggtctttcttcagcga 39382346  T
Q  240 ggaaaatgattt 251  Q
    |||||| |||||    
T  39382347 ggaaaacgattt 39382358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 39458281 - 39458210
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 114  Q
    |||||||||||||| ||||| |||||||| |||| || ||||||||||||||||||||||||||| ||||||    
T  39458281 ttcttgttttcaagatctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctact 39458210  T

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Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 131
Target Start/End: Original strand, 39399012 - 39399101
Alignment:
Q  42 cttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 131  Q
    |||||| ||| |||| ||||| ||||| || |||| || ||||||||||||||||||||||||||| |||||| |||||||||| |||||    
T  39399012 cttcttttttccaagttctttccagcagtcttcaatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgca 39399101  T

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Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 254
Target Start/End: Complemental strand, 39220198 - 39220086
Alignment:
Q  142 tctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcagcaagg 241  Q
    ||||||||||  ||||| |||||  |||| || |||| |  ||||||||| || ||| |||||||||| |||||||  |||||||||||||||||| |||    
T  39220198 tctctctttatggactgtaatcttctctcttcaactttctgcttccttttacactcctcaaataatttttctaacaccgcaaggtctttcttcagcgagg 39220099  T
Q  242 aaaatgatttatc 254  Q
    |||||||||||||    
T  39220098 aaaatgatttatc 39220086  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 140 - 254
Target Start/End: Original strand, 39199516 - 39199630
Alignment:
Q  140 tatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcagcaa 239  Q
    ||||||||||||  ||||||||||| ||||| || |||| |  ||||||||||||||||  ||||||||  |||| ||  | ||| |||||||||||| |    
T  39199516 tatctctctttatggactgcaatcttttctcttcaactttctgcttccttttgcattccttaaataattcttctagcagcgtaagctctttcttcagcga 39199615  T
Q  240 ggaaaatgatttatc 254  Q
    |||||||||||||||    
T  39199616 ggaaaatgatttatc 39199630  T

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Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 39151939 - 39151816
Alignment:
Q  137 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcag 236  Q
    |||||| ||||||||  ||||||| ||||||||| |||||||||   ||||||||||||||  ||| | |||| || |  |  ||||| |||||||||||    
T  39151939 caatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgcattcatcaattgatttttccacaaatgcaagctctttcttcag 39151840  T
Q  237 caaggaaaatgatttatcggttga 260  Q
    |||||||| ||||||||| |||||    
T  39151839 caaggaaattgatttatcagttga 39151816  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 39382183 - 39382282
Alignment:
Q  13 tcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctcta 112  Q
    |||||||||||||||  ||| || ||  ||||||| |||| ||||||||| |||||||| |||  || ||||||||||||||| ||||||||||| ||||    
T  39382183 tcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttcta 39382282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 39458250 - 39458127
Alignment:
Q  137 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcag 236  Q
    |||||||||||||||  ||||||||||||||||| ||||||||   | |||||||||| ||| ||||| |||| |||| ||  |  || |||||||||||    
T  39458250 caatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttttctaccaatgtgagttctttcttcag 39458151  T
Q  237 caaggaaaatgatttatcggttga 260  Q
    | || ||||||||| ||| |||||    
T  39458150 cgagaaaaatgattcatcagttga 39458127  T

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Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 39129549 - 39129491
Alignment:
Q  49 ttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctc 107  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||||||||||||||    
T  39129549 ttttcaagctctttggagcactcctcaatatctctctttatggactgcaatctcttctc 39129491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 39199452 - 39199546
Alignment:
Q  13 tcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctc 107  Q
    |||||||||||||||  ||| || ||  ||||||| |||| ||||||||| |||||||| |||  || ||||||||||||||||||||| |||||    
T  39199452 tcaattcttctaacaacactaacttggttcttcttattttgaagctctttgcagcactcttcagtatctctctttatggactgcaatcttttctc 39199546  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 251
Target Start/End: Original strand, 39488225 - 39488335
Alignment:
Q  141 atctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcattccacaaataatttatctaacatagcaaggtctttcttcagcaag 240  Q
    ||||||||||| |||||||| ||||  ||| |||||||||   ||||||||||||||| ||||| |  | |||| ||  ||||| ||||| |||||||||    
T  39488225 atctctctttatagactgcagtctcccctcttctacttgccttttccttttgcattcctcaaatgaggtttctaccaatgcaagttcttttttcagcaag 39488324  T
Q  241 gaaaatgattt 251  Q
    |||||||||||    
T  39488325 gaaaatgattt 39488335  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 114
Target Start/End: Complemental strand, 39450601 - 39450500
Alignment:
Q  13 tcaattcttctaacacaactgacctgtgtcttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctcta 112  Q
    |||||||||||||||||||| || ||  | ||||| |||| ||||||||| ||||| || |||| || | |||| ||||||||||||||||| || ||||    
T  39450601 tcaattcttctaacacaactaacttgctttttcttattttgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttcta 39450502  T
Q  113 ct 114  Q
    ||    
T  39450501 ct 39450500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 39488190 - 39488278
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 131  Q
    ||||| ||||||||||||||| ||||||| ||||||| ||||||||| ||||||| ||||  ||| ||||||  ||| ||||| |||||    
T  39488190 ttcttattttcaagctctttagagcactcctcaacatctctctttatagactgcagtctcccctcttctacttgccttttccttttgca 39488278  T

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Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 39136353 - 39136282
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 114  Q
    ||||| |||||||| ||||  |||||||| |||| || |||||||||||||||||||||| |||| ||||||    
T  39136353 ttcttattttcaagatcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttctact 39136282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 196
Target Start/End: Original strand, 39399044 - 39399103
Alignment:
Q  137 caatatctctctttagagactgcaatctcttctcatctacttgcaccttccttttgcatt 196  Q
    |||||||||||||||  ||||||||||||||||| ||||||| |  ||||||||||||||    
T  39399044 caatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgcatt 39399103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 114
Target Start/End: Original strand, 39422489 - 39422560
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 114  Q
    ||||| ||||| |||||||| |||||||  |||| || ||||||||||||||||||| ||||||| ||||||    
T  39422489 ttcttattttccagctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttctact 39422560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 39416378 - 39416435
Alignment:
Q  49 ttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttct 106  Q
    |||||||| ||| | |||||||| |||| || |||||||||||| |||||||||||||    
T  39416378 ttttcaagttctctgcagcactcctcaatatctctctttatggaatgcaatctcttct 39416435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 39479278 - 39479331
Alignment:
Q  226 tctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaatt 279  Q
    |||||||||||| |||||||||||||||| || ||||| || | ||||||||||    
T  39479278 tctttcttcagcgaggaaaatgatttatcagtcgattttcccgaccttttaatt 39479331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 39602063 - 39601994
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctcta 112  Q
    ||||| |||||||||||||| | |||||| | || || | ||||||||||||||||||| ||||| ||||    
T  39602063 ttcttattttcaagctctttgcggcactcctgaatatctatctttatggactgcaatctattctcttcta 39601994  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 27154993 - 27155041
Alignment:
Q  53 caagctctttacagcactcatcaacatatctctttatggactgcaatct 101  Q
    ||||||||||  ||||||| |||| || |||||||||||||||||||||    
T  27154993 caagctctttggagcactcctcaatatctctctttatggactgcaatct 27155041  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 39151970 - 39151882
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgca 131  Q
    ||||| ||||||||||||||  |||  || |||| || ||||||||| ||||||| ||||||||| ||||||  ||| ||||| |||||    
T  39151970 ttcttattttcaagctctttggagcgttcctcaatatttctctttattgactgcagtctcttctcttctacttgccttttccttttgca 39151882  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 39391674 - 39391726
Alignment:
Q  51 ttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 103  Q
    |||||||||||| |||||||| |||| || | ||||||||||| |||||||||    
T  39391674 ttcaagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 39474277 - 39474337
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctct 103  Q
    ||||| |||||||||||||   ||||||| |||| || |||||||||||| ||||||||||    
T  39474277 ttcttattttcaagctcttcggagcactcctcaatatctctctttatggaatgcaatctct 39474337  T

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Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 39479182 - 39479222
Alignment:
Q  67 cactcatcaacatatctctttatggactgcaatctcttctc 107  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctc 39479222  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 44614464 - 44614352
Alignment:
Q  190 ttgcattccacaaataatttatctaacatagcaaggtctttcttcagcaaggaaaatgatttatcggttgatttgcctggccttttaattaaatccgaca 289  Q
    ||||||||| ||||| |||| | ||||   ||||| |||||| ||||| ||||||||||  |||| | ||||||||||| ||||||| ||| || | ||     
T  44614464 ttgcattcctcaaatgatttttttaacgatgcaagttctttcctcagcgaggaaaatgaaatatcagctgatttgcctgaccttttatttatattcaacg 44614365  T
Q  290 aaagaatatcatc 302  Q
    || ||||||||||    
T  44614364 aaggaatatcatc 44614352  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 16112485 - 16112406
Alignment:
Q  54 aagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctactgtcctcttcctcttgcaat 133  Q
    |||||||||||| || || |||| || ||||||||||||||||||| ||||||| ||| ||||||||||||| |||||||    
T  16112485 aagctctttacaacattcttcaatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaat 16112406  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 19806714 - 19806643
Alignment:
Q  43 ttcttgttttcaagctctttacagcactcatcaacatatctctttatggactgcaatctcttctcctctact 114  Q
    ||||| |||||||| ||||  ||||| || |||| || |||||||||||||||||||||| |||| ||||||    
T  19806714 ttcttattttcaagatcttcgcagcaatcctcaatatctctctttatggactgcaatctcctctcttctact 19806643  T

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