View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982_high_2 (Length: 515)
Name: NF4982_high_2
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 438
Target Start/End: Original strand, 43601883 - 43602310
Alignment:
| Q |
11 |
tcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcac |
110 |
Q |
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| T |
43601883 |
tcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcac |
43601982 |
T |
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| Q |
111 |
gtgcatcacgtgccagagctattaatttatagaattgttatccacttaacttaaccagggtagaaaaatttggtgacacatgtattggctttggatgctt |
210 |
Q |
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| T |
43601983 |
gtgcatcacgtgccagagctattaatttatagaatcgttatccacttaacttaaccagggtagaaaaatttggtga-acatgtattggctttggatgctt |
43602081 |
T |
|
| Q |
211 |
tgattcttactgattaattaaagagaaattagtcttcttctgctgaagtta-ttgattgcctttacctttagctagagaattgcgcatacatatgtacgg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43602082 |
tgattcttactgattaattaaagagaaattagtcttcttctgctgaagttagttgattgcctttacctttagctagagaattgcgcatacatatgtaccg |
43602181 |
T |
|
| Q |
310 |
agatttcacattgaatatgtgtctaatgtctgacatgtgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattatt |
409 |
Q |
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| T |
43602182 |
agatttcacattgaatatgtgtctaatatctgacatgtgttagtgtcgtacactgatgcatgggttccattcaattactttcatctttaaaattattatt |
43602281 |
T |
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| Q |
410 |
gatgccaacactcagcatgtgtttgtatt |
438 |
Q |
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| T |
43602282 |
gatgccaacactcagcatgtgtttgtatt |
43602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 430 - 499
Target Start/End: Original strand, 43602495 - 43602564
Alignment:
| Q |
430 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaaagcaatagcatgtgcttgtatt |
499 |
Q |
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| T |
43602495 |
gtttgtattagtgctatataggccaagagtagacactcttatatcaaatgcaatagcatgtgcttgtatt |
43602564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 22436329 - 22436220
Alignment:
| Q |
13 |
aaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgcagtctgtcacgt |
112 |
Q |
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||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||| ||||||||| | |
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| T |
22436329 |
aaattatgaaaatgatttctgcaccaaaacatactcccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcggtctgtcacat |
22436230 |
T |
|
| Q |
113 |
gcatcacgtg |
122 |
Q |
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|||||||||| |
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| T |
22436229 |
gcatcacgtg |
22436220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 22239124 - 22239084
Alignment:
| Q |
13 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
53 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
22239124 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
22239084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 37560642 - 37560602
Alignment:
| Q |
13 |
aaattatgaaaattatttctgcaccaaaacacagccccgca |
53 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
37560642 |
aaattatgaaaattatttctgcaccaaaacacagtcccgca |
37560602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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