View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982_low_13 (Length: 251)
Name: NF4982_low_13
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982_low_13 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: scaffold0768 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 266 - 37
Alignment:
| Q |
18 |
cttaccaccttttttctctcaataataaatcttcctcctttagatataacttaaccttgccatgatcaagttacagaacaatatggtaacaaattgttag |
117 |
Q |
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| T |
266 |
cttaccaccctttttctctcaataatatatcttcctcctttatatataacttaaccttgccatgatcaagttacagaacaatatggtaacaaattgttag |
167 |
T |
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| Q |
118 |
aaacttgttcacctttatcaataatagtatcaaagcctaattcaccaaaaacttttcttaagaaacaaaaataacacaagtcttaggattttatccacct |
217 |
Q |
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| T |
166 |
aaacttgttcacctttatc---aatagtatcaaagcctaattcattaacaacttttcttaagaaacaatcttaacacacgtcttaggattttatccacct |
70 |
T |
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| Q |
218 |
ttgcacctaatatctcatgcaacaatctttatt |
250 |
Q |
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| T |
69 |
ttgcacctaatatctcatgcaaaaatctttatt |
37 |
T |
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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 6845830 - 6845868
Alignment:
| Q |
27 |
ttttttctctcaataataaatcttcctcctttagatata |
65 |
Q |
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| T |
6845830 |
ttttttctctcaataataaatcttcctcctttatatata |
6845868 |
T |
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