View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4982_low_3 (Length: 470)

Name: NF4982_low_3
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4982_low_3
NF4982_low_3
[»] chr2 (7 HSPs)
chr2 (1-333)||(32498805-32499143)
chr2 (331-461)||(32499552-32499682)
chr2 (124-215)||(38821366-38821457)
chr2 (124-162)||(24766152-24766190)
chr2 (120-153)||(15678169-15678202)
chr2 (400-440)||(32499681-32499721)
chr2 (123-175)||(35334519-35334571)
[»] chr5 (1 HSPs)
chr5 (120-200)||(40829410-40829490)
[»] chr1 (5 HSPs)
chr1 (120-171)||(49020428-49020479)
chr1 (120-161)||(47059913-47059954)
chr1 (122-162)||(9445106-9445146)
chr1 (120-208)||(16263421-16263509)
chr1 (124-208)||(33076119-33076203)
[»] chr6 (3 HSPs)
chr6 (121-163)||(16743298-16743340)
chr6 (241-283)||(33210228-33210270)
chr6 (114-162)||(31204843-31204891)
[»] chr4 (2 HSPs)
chr4 (124-162)||(20632681-20632719)
chr4 (124-164)||(52697483-52697523)
[»] chr3 (2 HSPs)
chr3 (120-162)||(52100257-52100299)
chr3 (124-201)||(33976388-33976465)
[»] chr8 (2 HSPs)
chr8 (123-163)||(14548855-14548895)
chr8 (122-162)||(23754740-23754780)


Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 32498805 - 32499143
Alignment:
Q  1 cccagagtttgtatcagagtttccagatggttccaaaaaagaaggttgtttcaaaagttatcaacttttgattattgattattcaaatatcattactcaa 100  Q
    |||||||||||||||| |||||||  |||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32498805 cccagagtttgtatcaaagtttccgaatggttccaaaaaaaaaggttgttccaaaagttgtcaacttttgattattgattattcaaatatcattactcaa 32498904  T
Q  101 taatacatatgacatatgtaaatgagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgttttta 200  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||    
T  32498905 taatacatatgacatatgcaaatgagaaatgatatttatacaatcattttctaataacttttaagacaattctttctataatactctcattatgtttata 32499004  T
Q  201 tcttctctgtattgcatt--gat-----tatatttattcacatgcacttagttgtctaataaattgtttt-aaaaatgatagttgaaataagatatacat 292  Q
    | | |  || ||| | ||   ||     |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32499005 t-tgcattg-atttcgttccaatatacctatatttattcacatgcatttagttgtctaataaattgttttaaaaaatgatagttgaaataagatatacat 32499102  T
Q  293 catctatgcaaatatatgtacctttgatgtcaaaacaatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32499103 catctatgcaaatatatgtacctttgatgtcaaaacaatat 32499143  T

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Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 331 - 461
Target Start/End: Original strand, 32499552 - 32499682
Alignment:
Q  331 tatttatatacacttttgatgtcaaaacaatatgacgattataataatgatcgcgtatagagaatcagatttgatgcgctgaaatttataaaatattaca 430  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32499552 tatttatatacacttttgatgtcaaaacaatatggcgattataataatgatcgcctatagagaatcagatttgatgtgctgaaatttataaaatattaca 32499651  T
Q  431 tatgtagtaccttttctctttggatattctt 461  Q
    |||||||||||||||||||||||||||||||    
T  32499652 tatgtagtaccttttctctttggatattctt 32499682  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 215
Target Start/End: Original strand, 38821366 - 38821457
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttatcttctctgtattgc 215  Q
    |||||||||||||   ||||||||||| | | |||||||  ||||||| | ||| | |||||| ||||||||||||| ||||||| ||||||    
T  38821366 gagaaatgatatttgaacaaccattttatgacaacttttgtgacaattttctttctcatactcacattgtgtttttaccttctctctattgc 38821457  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 24766152 - 24766190
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataactttt 162  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  24766152 gagaaatgatatttgtacaaccattttttaataactttt 24766190  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 15678169 - 15678202
Alignment:
Q  120 aaatgagaaatgatattcatacaaccatttttta 153  Q
    ||||||||||||||||| ||||||||||||||||    
T  15678169 aaatgagaaatgatatttatacaaccatttttta 15678202  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 32499681 - 32499721
Alignment:
Q  400 tttgatgcgctgaaatttataaaatattacatatgtagtac 440  Q
    ||||||| |||||||||||||||||||||||| | ||||||    
T  32499681 tttgatgtgctgaaatttataaaatattacatgtatagtac 32499721  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 35334519 - 35334571
Alignment:
Q  123 tgagaaatgatattcatacaaccattttttaataacttttaagacaattcttt 175  Q
    ||||||||||||||  |||||||||||| |||||||||||   ||||||||||    
T  35334519 tgagaaatgatatttgtacaaccattttataataacttttgtaacaattcttt 35334571  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 200
Target Start/End: Original strand, 40829410 - 40829490
Alignment:
Q  120 aaatgagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgttttta 200  Q
    |||||||||||||||||  ||||||||||||||||||| ||||  ||||||| ||| | | |||||| |||| | ||||||    
T  40829410 aaatgagaaatgatatttgtacaaccattttttaataatttttgtgacaattttttctctcatactcacattatattttta 40829490  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 49020479 - 49020428
Alignment:
Q  120 aaatgagaaatgatattcatacaaccattttttaataacttttaagacaatt 171  Q
    |||||||||||||||||  |||||||||||||||| |||||||  |||||||    
T  49020479 aaatgagaaatgatatttgtacaaccattttttaacaacttttgtgacaatt 49020428  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 47059954 - 47059913
Alignment:
Q  120 aaatgagaaatgatattcatacaaccattttttaataacttt 161  Q
    |||||||||||||||||  |||||||||||||||| ||||||    
T  47059954 aaatgagaaatgatatttgtacaaccattttttaacaacttt 47059913  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 9445106 - 9445146
Alignment:
Q  122 atgagaaatgatattcatacaaccattttttaataactttt 162  Q
    |||||||||||||||| |||||||||||| ||| |||||||    
T  9445106 atgagaaatgatattcgtacaaccattttgtaacaactttt 9445146  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 16263421 - 16263509
Alignment:
Q  120 aaatgagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttatcttctct 208  Q
    |||||||||||||||||  |||||  ||||| ||| |||||||| ||||||| ||||| | ||| || |||| | ||||||| ||||||    
T  16263421 aaatgagaaatgatatttgtacaattattttctaacaacttttatgacaattttttttctcatattcacattatatttttattttctct 16263509  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 208
Target Start/End: Original strand, 33076119 - 33076203
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttatcttctct 208  Q
    |||||||||||||  |||||||||||| ||| |||||||| ||||| | | | ||| |||||| |||| | ||||||| ||||||    
T  33076119 gagaaatgatatttgtacaaccattttctaacaacttttatgacaactttctctatcatactcacattatatttttattttctct 33076203  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 163
Target Start/End: Complemental strand, 16743340 - 16743298
Alignment:
Q  121 aatgagaaatgatattcatacaaccattttttaataactttta 163  Q
    ||||||||||||||||  ||||||||||||||||||| |||||    
T  16743340 aatgagaaatgatatttgtacaaccattttttaataattttta 16743298  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 33210228 - 33210270
Alignment:
Q  241 ttagttgtctaataaattgttttaaaaatgatagttgaaataa 283  Q
    |||||||||| ||||||||||||||||||| | ||||||||||    
T  33210228 ttagttgtcttataaattgttttaaaaatggttgttgaaataa 33210270  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 31204891 - 31204843
Alignment:
Q  114 atatgtaaatgagaaatgatattcatacaaccattttttaataactttt 162  Q
    |||| |||| |||||||||||||  |||||||||||||| |||||||||    
T  31204891 atatttaaaagagaaatgatatttctacaaccattttttgataactttt 31204843  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 20632719 - 20632681
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataactttt 162  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  20632719 gagaaatgatatttatacaaccattttttgataactttt 20632681  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 52697483 - 52697523
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataacttttaa 164  Q
    ||||||||||||| |||||| ||||||||||||| ||||||    
T  52697483 gagaaatgatatttatacaatcattttttaataatttttaa 52697523  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 162
Target Start/End: Original strand, 52100257 - 52100299
Alignment:
Q  120 aaatgagaaatgatattcatacaaccattttttaataactttt 162  Q
    |||||||||||||||||  ||||||||||||||||||| ||||    
T  52100257 aaatgagaaatgatatttgtacaaccattttttaataattttt 52100299  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 201
Target Start/End: Complemental strand, 33976465 - 33976388
Alignment:
Q  124 gagaaatgatattcatacaaccattttttaataacttttaagacaattctttttataatactctcattgtgtttttat 201  Q
    |||||||||||||   ||| ||||||| ||| |||||||| |||||| || ||| | ||||||||||||| |||||||    
T  33976465 gagaaatgatatttgaacatccattttgtaacaacttttatgacaatcctctttttcatactctcattgtttttttat 33976388  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 14548895 - 14548855
Alignment:
Q  123 tgagaaatgatattcatacaaccattttttaataactttta 163  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  14548895 tgagaaatgatatttgtacaaccattttttaataattttta 14548855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 23754780 - 23754740
Alignment:
Q  122 atgagaaatgatattcatacaaccattttttaataactttt 162  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  23754780 atgagaaatgatatttgaacaaccattttttaataactttt 23754740  T

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