View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982_low_5 (Length: 369)
Name: NF4982_low_5
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982_low_5 |
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| [»] scaffold1847 (1 HSPs) |
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Alignment Details
Target: scaffold1847 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold1847
Description:
Target: scaffold1847; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 117 - 362
Target Start/End: Complemental strand, 940 - 689
Alignment:
| Q |
117 |
gttattttgagaaggaaatgccaatgaataacaatttttattagtttgtttgctttaagggcccatttgtttcaattttaatataagggaaatgctaaat |
216 |
Q |
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| T |
940 |
gttattttgagaaggaaatgccaatgaatcacaatttttattagtttgtttgctttaagggcccatttgtttcaattttaatataaggaaaatgctaaag |
841 |
T |
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| Q |
217 |
aaaaaataacaaatatatctgct------acacacacatttctatattaattatactttatataaagagaatgcataatgttggaatgattttgtcgctt |
310 |
Q |
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| T |
840 |
aaaaaataacaaatatatctgctatatacacacacacatttctatattaattatactttatataaagagaatgcataatgttggaatgattttgtcgctt |
741 |
T |
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| Q |
311 |
ccaattacacctttaaataaacttgtctataagaatgtatattagctatatt |
362 |
Q |
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| T |
740 |
ccaattatacctttaaataaacttgtctataaaaatgtatattagctatatt |
689 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 36701301 - 36701342
Alignment:
| Q |
312 |
caattacacctttaaataaacttgtctataagaatgtatatt |
353 |
Q |
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| T |
36701301 |
caattacacatttaaataaatttgtctataagaatgtgtatt |
36701342 |
T |
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