View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982_low_6 (Length: 335)
Name: NF4982_low_6
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 113 - 335
Target Start/End: Complemental strand, 1050664 - 1050442
Alignment:
| Q |
113 |
ataaatcaatcaagtgttgtgttttctgtgtgtgattttttgttgttcatatggcatctcatgatatctcatctgctaagttgtcatcaatgtgtgacat |
212 |
Q |
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| T |
1050664 |
ataaatcaatcaagtgttgtgttttctgtgtgtgattttttgttgttcatatggcatctcatgatatctcatctgctaagttgtcatcaatgtgtgacat |
1050565 |
T |
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| Q |
213 |
aacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1050564 |
aacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttg |
1050465 |
T |
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| Q |
313 |
atttcaagtccttatttcattaa |
335 |
Q |
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||||||||||||||||||||||| |
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| T |
1050464 |
atttcaagtccttatttcattaa |
1050442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 170 - 297
Target Start/End: Original strand, 42750754 - 42750881
Alignment:
| Q |
170 |
ctcatgatatctcatctgctaagttgtcatcaatgtgtgacataacatacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatc |
269 |
Q |
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|||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||| || | |||| |||| || || ||||| ||||| |
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| T |
42750754 |
ctcatgatatctcacttgctaagttgtcttcaaggtgtgacataacatatttatcagatgatttgttgcaccaaattttcactcgcgtgccattgagatc |
42750853 |
T |
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| Q |
270 |
cactgttggatgcaaatgtgtttcaaaa |
297 |
Q |
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| T |
42750854 |
caccgttgcatgcaaatgtgtttcaaaa |
42750881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 332
Target Start/End: Complemental strand, 42876078 - 42875963
Alignment:
| Q |
217 |
tacttatcagatgatttattagccaaaatattcagtcttgtaccatttagatccactgttggatgcaaatgtgtttcaaaacgttggttagatttgattt |
316 |
Q |
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|||||||||||||||||||||| | |||| |||| | ||| |||| ||||| || |||| ||||||||||||||||||||||||||| |||||||| |
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| T |
42876078 |
tacttatcagatgatttattaggccaaattttcacccgtgtgccatccagatcaaccgttgcatgcaaatgtgtttcaaaacgttggttgagtttgattt |
42875979 |
T |
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| Q |
317 |
caagtccttatttcat |
332 |
Q |
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||| | || ||||||| |
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| T |
42875978 |
caaatactgatttcat |
42875963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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