View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4982_low_7 (Length: 328)
Name: NF4982_low_7
Description: NF4982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4982_low_7 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 44663014 - 44662700
Alignment:
| Q |
14 |
cacatatatagatgactagctataaatgtataaaaatacactatttataattgctatcggtccgacttcagtcgaaccctaatcagatcattgaattttc |
113 |
Q |
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| T |
44663014 |
cacatatatagatgactagctagaaatgtataaaaatacactatttataattgctatcggtccgacttcagtcgaaccctaatcagatcattcaattttc |
44662915 |
T |
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| Q |
114 |
aacatgtgcaacaaagcagtaagctaattcggtttttctggccatatatagtaatattcattagtcatgcatattacagggatataatggagagtcaaga |
213 |
Q |
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| T |
44662914 |
aatatgagcaacaaagcagtaagctaattcggtttttctggccatatatattaatattcattagtcatgcatattacagggatataatggagagtcaaga |
44662815 |
T |
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| Q |
214 |
aggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaagctctcaagagaagagaaacatgatgaagag |
313 |
Q |
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| T |
44662814 |
aggaaacaacatggcaatgactttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaaactctcaagagaagagaaacatgatgaagag |
44662715 |
T |
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| Q |
314 |
aacattattggactt |
328 |
Q |
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| T |
44662714 |
aacattattggactt |
44662700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 29339451 - 29339573
Alignment:
| Q |
183 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
282 |
Q |
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| T |
29339451 |
catattacagggatataatggagagcttagaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcaatgccaa |
29339550 |
T |
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| Q |
283 |
gctctcaagagaagagaaacatg |
305 |
Q |
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| T |
29339551 |
actctcaggagaagagagacatg |
29339573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 305
Target Start/End: Original strand, 29352613 - 29352735
Alignment:
| Q |
183 |
catattacagggatataatggagagtcaagaaggaaacaacatggcaatgacgttcattcctgatgcagaattgttgccaacggttgtagtcaatgccaa |
282 |
Q |
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||||||||||||||| | ||||||| |||||||| ||||||| ||||| | |||||||||||||||| |||||||||| ||||| | || |||||| |
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| T |
29352613 |
catattacagggatacagtggagagcttagaaggaagcaacatgacaatggctatcattcctgatgcagagatgttgccaacagttgttggcattgccaa |
29352712 |
T |
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| Q |
283 |
gctctcaagagaagagaaacatg |
305 |
Q |
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| T |
29352713 |
actctcagaagaagagagacatg |
29352735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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